miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 3' -54.3 NC_005337.1 + 133637 0.69 0.841945
Target:  5'- -gUCGCCGUgcaGGACGUcgCCGcGCuGGa -3'
miRNA:   3'- gaAGCGGUAg--CUUGCGuaGGC-CGuCC- -5'
25536 3' -54.3 NC_005337.1 + 85346 0.71 0.741812
Target:  5'- -gUCGCCGUCGAugGUcacgCUGGCGa- -3'
miRNA:   3'- gaAGCGGUAGCUugCGua--GGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 85866 0.7 0.780244
Target:  5'- --cCGCCAugUCGGGCGCgAUCgGGCAcacGGa -3'
miRNA:   3'- gaaGCGGU--AGCUUGCG-UAGgCCGU---CC- -5'
25536 3' -54.3 NC_005337.1 + 40486 0.7 0.780244
Target:  5'- --aCGCgaccaCGUCGuAGCGCGUCCGGCGa- -3'
miRNA:   3'- gaaGCG-----GUAGC-UUGCGUAGGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 31502 0.7 0.807678
Target:  5'- --aCGCCuUCGAcGCGCucgaccUCCGGguGGa -3'
miRNA:   3'- gaaGCGGuAGCU-UGCGu-----AGGCCguCC- -5'
25536 3' -54.3 NC_005337.1 + 15998 0.69 0.81651
Target:  5'- -gUCGCagcugCGAgaccguacGCGCggCCGGCAGGu -3'
miRNA:   3'- gaAGCGgua--GCU--------UGCGuaGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 1036 0.69 0.82517
Target:  5'- aCUUUGCgCGggaggCGGGCgGCGggaggCCGGCGGGg -3'
miRNA:   3'- -GAAGCG-GUa----GCUUG-CGUa----GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 78885 0.69 0.82517
Target:  5'- -gUCGCCGUgGuacACGUuccgCUGGCAGGu -3'
miRNA:   3'- gaAGCGGUAgCu--UGCGua--GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 7769 0.69 0.833651
Target:  5'- cCUUUGCacuaAUUGGuuGCGCucaaugCCGGCGGGg -3'
miRNA:   3'- -GAAGCGg---UAGCU--UGCGua----GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 41805 0.71 0.741812
Target:  5'- --gCGCCGUCGAG-GCGUUCGcCAGGa -3'
miRNA:   3'- gaaGCGGUAGCUUgCGUAGGCcGUCC- -5'
25536 3' -54.3 NC_005337.1 + 124782 0.72 0.7008
Target:  5'- ---gGCCAUCGAgcucugcGCGCAgaugggCCGGCGGu -3'
miRNA:   3'- gaagCGGUAGCU-------UGCGUa-----GGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 58872 0.72 0.691641
Target:  5'- --gCGCCGUCc-GCGCAUCCGcGCGGc -3'
miRNA:   3'- gaaGCGGUAGcuUGCGUAGGC-CGUCc -5'
25536 3' -54.3 NC_005337.1 + 58711 0.76 0.441528
Target:  5'- -aUCGCCGUCGGcagguagauggGCGCG-CCGGCGcGGg -3'
miRNA:   3'- gaAGCGGUAGCU-----------UGCGUaGGCCGU-CC- -5'
25536 3' -54.3 NC_005337.1 + 104676 0.76 0.469438
Target:  5'- --cUGCCG-CGGGCGCAagaccaagcucaUCCGGCAGGc -3'
miRNA:   3'- gaaGCGGUaGCUUGCGU------------AGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 43259 0.75 0.507011
Target:  5'- -cUCGCUcUCGAGCGCcgccagcAUCCGGCuGGu -3'
miRNA:   3'- gaAGCGGuAGCUUGCG-------UAGGCCGuCC- -5'
25536 3' -54.3 NC_005337.1 + 62174 0.75 0.521803
Target:  5'- --aCGCCGUCGAggucguacaugaagACGUAgcgcagguucaguuUCCGGCGGGa -3'
miRNA:   3'- gaaGCGGUAGCU--------------UGCGU--------------AGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 75180 0.74 0.568112
Target:  5'- -gUCGCC-UCGcGCGCGUCC-GCGGGc -3'
miRNA:   3'- gaAGCGGuAGCuUGCGUAGGcCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 41505 0.73 0.619516
Target:  5'- --cCGCgAUgGAGCGCAUCCGcGCGGc -3'
miRNA:   3'- gaaGCGgUAgCUUGCGUAGGC-CGUCc -5'
25536 3' -54.3 NC_005337.1 + 38313 0.73 0.640199
Target:  5'- --gCGCgCGUCGAGCGCAacgaccgacgcgUCUGGCuGGa -3'
miRNA:   3'- gaaGCG-GUAGCUUGCGU------------AGGCCGuCC- -5'
25536 3' -54.3 NC_005337.1 + 86395 0.72 0.660856
Target:  5'- --cCGCCAggCGGcugcGCGCGUCCGGCGc- -3'
miRNA:   3'- gaaGCGGUa-GCU----UGCGUAGGCCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.