miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 3' -54.3 NC_005337.1 + 114792 1.12 0.002708
Target:  5'- cCUUCGCCAUCGAACGCAUCCGGCAGGg -3'
miRNA:   3'- -GAAGCGGUAGCUUGCGUAGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 91740 0.82 0.232888
Target:  5'- --gCGCCcgC-AGCGCGUCCGGCGGGa -3'
miRNA:   3'- gaaGCGGuaGcUUGCGUAGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 34798 0.78 0.380274
Target:  5'- -gUCGCCAUCu-GCGCGUCgCGGguGGc -3'
miRNA:   3'- gaAGCGGUAGcuUGCGUAG-GCCguCC- -5'
25536 3' -54.3 NC_005337.1 + 72786 0.77 0.423452
Target:  5'- -aUCGCgAUC-AACGCGcgCCGGCAGGa -3'
miRNA:   3'- gaAGCGgUAGcUUGCGUa-GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 108172 0.77 0.432435
Target:  5'- -aUCGCCG-CGGugGaCAUCCGGCGGc -3'
miRNA:   3'- gaAGCGGUaGCUugC-GUAGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 58711 0.76 0.441528
Target:  5'- -aUCGCCGUCGGcagguagauggGCGCG-CCGGCGcGGg -3'
miRNA:   3'- gaAGCGGUAGCU-----------UGCGUaGGCCGU-CC- -5'
25536 3' -54.3 NC_005337.1 + 34875 0.76 0.460032
Target:  5'- --cCGCCcgCGGuGCGCAgcaCCGGCAGGu -3'
miRNA:   3'- gaaGCGGuaGCU-UGCGUa--GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 104676 0.76 0.469438
Target:  5'- --cUGCCG-CGGGCGCAagaccaagcucaUCCGGCAGGc -3'
miRNA:   3'- gaaGCGGUaGCUUGCGU------------AGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 57094 0.76 0.47894
Target:  5'- gUUCGCCAUCcgcgGGugGCG-CCGGCAGu -3'
miRNA:   3'- gAAGCGGUAG----CUugCGUaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 23636 0.76 0.47894
Target:  5'- aCUUCGCCGaCGAgaGCGuCGUCCGGaGGGa -3'
miRNA:   3'- -GAAGCGGUaGCU--UGC-GUAGGCCgUCC- -5'
25536 3' -54.3 NC_005337.1 + 5587 0.76 0.488536
Target:  5'- -gUCGCCAgCGcGCGUGcCCGGCGGGg -3'
miRNA:   3'- gaAGCGGUaGCuUGCGUaGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 43259 0.75 0.507011
Target:  5'- -cUCGCUcUCGAGCGCcgccagcAUCCGGCuGGu -3'
miRNA:   3'- gaAGCGGuAGCUUGCG-------UAGGCCGuCC- -5'
25536 3' -54.3 NC_005337.1 + 38125 0.75 0.507991
Target:  5'- uCUUCGCCAUCu-ACGCGUuCCGGCu-- -3'
miRNA:   3'- -GAAGCGGUAGcuUGCGUA-GGCCGucc -5'
25536 3' -54.3 NC_005337.1 + 62174 0.75 0.521803
Target:  5'- --aCGCCGUCGAggucguacaugaagACGUAgcgcagguucaguuUCCGGCGGGa -3'
miRNA:   3'- gaaGCGGUAGCU--------------UGCGU--------------AGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 105422 0.75 0.527767
Target:  5'- -aUCGCCGUCGggUGCAUCgCGG-AGu -3'
miRNA:   3'- gaAGCGGUAGCuuGCGUAG-GCCgUCc -5'
25536 3' -54.3 NC_005337.1 + 75180 0.74 0.568112
Target:  5'- -gUCGCC-UCGcGCGCGUCC-GCGGGc -3'
miRNA:   3'- gaAGCGGuAGCuUGCGUAGGcCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 75637 0.74 0.568112
Target:  5'- ---gGCCGUCGugaugGGCGCGUCCGGCGu- -3'
miRNA:   3'- gaagCGGUAGC-----UUGCGUAGGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 57147 0.73 0.619516
Target:  5'- --aCGCCGUgGAGCGCAgcacCCGGCGc- -3'
miRNA:   3'- gaaGCGGUAgCUUGCGUa---GGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 101085 0.73 0.619516
Target:  5'- --cCGCCGUCGGgaggGCcCGUCCGGCGcGGg -3'
miRNA:   3'- gaaGCGGUAGCU----UGcGUAGGCCGU-CC- -5'
25536 3' -54.3 NC_005337.1 + 41505 0.73 0.619516
Target:  5'- --cCGCgAUgGAGCGCAUCCGcGCGGc -3'
miRNA:   3'- gaaGCGgUAgCUUGCGUAGGC-CGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.