miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 3' -54.3 NC_005337.1 + 876 0.66 0.948966
Target:  5'- ---gGCCGggcggaaGAGCGCG-CCGaGCAGGa -3'
miRNA:   3'- gaagCGGUag-----CUUGCGUaGGC-CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 876 0.66 0.948966
Target:  5'- ---gGCCGggcggaaGAGCGCG-CCGaGCAGGa -3'
miRNA:   3'- gaagCGGUag-----CUUGCGUaGGC-CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 1036 0.69 0.82517
Target:  5'- aCUUUGCgCGggaggCGGGCgGCGggaggCCGGCGGGg -3'
miRNA:   3'- -GAAGCG-GUa----GCUUG-CGUa----GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 1036 0.69 0.82517
Target:  5'- aCUUUGCgCGggaggCGGGCgGCGggaggCCGGCGGGg -3'
miRNA:   3'- -GAAGCG-GUa----GCUUG-CGUa----GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 1277 0.68 0.880359
Target:  5'- -aUgGCCcgCGGAgGCGggUCGGCGGGc -3'
miRNA:   3'- gaAgCGGuaGCUUgCGUa-GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 2860 0.66 0.953117
Target:  5'- aCUUgGCCgAUCGGcgccucaccaGCGUggCCGGCGGc -3'
miRNA:   3'- -GAAgCGG-UAGCU----------UGCGuaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 5449 0.67 0.907078
Target:  5'- --aCGCgGUCGA--GCAUCUccgggGGCAGGg -3'
miRNA:   3'- gaaGCGgUAGCUugCGUAGG-----CCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 5587 0.76 0.488536
Target:  5'- -gUCGCCAgCGcGCGUGcCCGGCGGGg -3'
miRNA:   3'- gaAGCGGUaGCuUGCGUaGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 5798 0.69 0.831126
Target:  5'- --aCGCCcgCGAgcacgcggucucccGCGCcgGUCCGGCGGu -3'
miRNA:   3'- gaaGCGGuaGCU--------------UGCG--UAGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 7769 0.69 0.833651
Target:  5'- cCUUUGCacuaAUUGGuuGCGCucaaugCCGGCGGGg -3'
miRNA:   3'- -GAAGCGg---UAGCU--UGCGua----GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 8423 0.68 0.865631
Target:  5'- --cCGCaCcgCGGggauCGCAUCCGGCGGc -3'
miRNA:   3'- gaaGCG-GuaGCUu---GCGUAGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 9971 0.67 0.92461
Target:  5'- --gCGCCGcgaCGAGgcCGCGUCCucggccacGGCAGGg -3'
miRNA:   3'- gaaGCGGUa--GCUU--GCGUAGG--------CCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 10175 0.67 0.92461
Target:  5'- -cUUGCCggCGAGCGCGaagacCUGGCGGc -3'
miRNA:   3'- gaAGCGGuaGCUUGCGUa----GGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 10811 0.67 0.929968
Target:  5'- --cCGCUgcgUGGACGCcgCgGGCGGGu -3'
miRNA:   3'- gaaGCGGua-GCUUGCGuaGgCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 11366 0.72 0.711927
Target:  5'- --gCGCCcUCGAGCGCGcucgccaUCGGCGGGc -3'
miRNA:   3'- gaaGCGGuAGCUUGCGUa------GGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 11948 0.69 0.833651
Target:  5'- --gCGCCGUCGAGggacgcgcauauCGCGUCa-GCGGGg -3'
miRNA:   3'- gaaGCGGUAGCUU------------GCGUAGgcCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 12480 0.66 0.953117
Target:  5'- -aUCGCCGUCGAucUGCAUgucaUCGaGCAGc -3'
miRNA:   3'- gaAGCGGUAGCUu-GCGUA----GGC-CGUCc -5'
25536 3' -54.3 NC_005337.1 + 12930 0.66 0.953117
Target:  5'- -gUCGCCGcCGAACuccagGUA-CCGGCGGa -3'
miRNA:   3'- gaAGCGGUaGCUUG-----CGUaGGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 13819 0.68 0.894186
Target:  5'- --gCGCgCGcUCGAGCGCGcCCcGCAGGg -3'
miRNA:   3'- gaaGCG-GU-AGCUUGCGUaGGcCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 15189 0.66 0.933572
Target:  5'- -gUCGCCGUCGAgggucAUGCAgUCCaGGCugcgacacaccgcgAGGa -3'
miRNA:   3'- gaAGCGGUAGCU-----UGCGU-AGG-CCG--------------UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.