miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 5' -57.9 NC_005337.1 + 25435 0.66 0.805347
Target:  5'- cGGCGUGucgcCCGcGCGCUucgGCaCCGuGGACg -3'
miRNA:   3'- -CCGCAU----GGC-CGUGA---UGcGGCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 130168 0.66 0.839043
Target:  5'- cGCGUcuCCGcGCGC-GCGgUGAGGACg -3'
miRNA:   3'- cCGCAu-GGC-CGUGaUGCgGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 21925 0.66 0.822532
Target:  5'- aGGUG-GCCGcGCGCUcCGCCGAGcucGCg -3'
miRNA:   3'- -CCGCaUGGC-CGUGAuGCGGCUCc--UGa -5'
25536 5' -57.9 NC_005337.1 + 65283 0.66 0.830876
Target:  5'- cGGUGa--CGGCGCU-CGCCaaggagGAGGGCa -3'
miRNA:   3'- -CCGCaugGCCGUGAuGCGG------CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 119015 0.66 0.805347
Target:  5'- cGCGUcGCCacaacguucGGCGCcgGCGCCGccAGGACc -3'
miRNA:   3'- cCGCA-UGG---------CCGUGa-UGCGGC--UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 59257 0.66 0.839043
Target:  5'- uGCGagUCGGUGCUGCGCCaccGGGCg -3'
miRNA:   3'- cCGCauGGCCGUGAUGCGGcu-CCUGa -5'
25536 5' -57.9 NC_005337.1 + 64237 0.66 0.830876
Target:  5'- aGCGccucuUugCGGCGCUGCGgCGgcucuGGGACc -3'
miRNA:   3'- cCGC-----AugGCCGUGAUGCgGC-----UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 105622 0.66 0.822532
Target:  5'- cGGCGUGCCGuu-CUGCaCCGucGGGCUc -3'
miRNA:   3'- -CCGCAUGGCcguGAUGcGGCu-CCUGA- -5'
25536 5' -57.9 NC_005337.1 + 131630 0.66 0.822532
Target:  5'- aGGCG-GCCGGCGCcaccuucCGCuuCGAGGAg- -3'
miRNA:   3'- -CCGCaUGGCCGUGau-----GCG--GCUCCUga -5'
25536 5' -57.9 NC_005337.1 + 23794 0.66 0.822532
Target:  5'- aGCuGgcCCGGUAcCUGCGCCGcacGGGCg -3'
miRNA:   3'- cCG-CauGGCCGU-GAUGCGGCu--CCUGa -5'
25536 5' -57.9 NC_005337.1 + 66908 0.66 0.821689
Target:  5'- cGGCGcacgaugUACuCGGUcauggGCUGCGCCaucgugGAGGGCg -3'
miRNA:   3'- -CCGC-------AUG-GCCG-----UGAUGCGG------CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 94035 0.66 0.805347
Target:  5'- uGGCGcgGCgCGGCGCg--GCCGAcGACUu -3'
miRNA:   3'- -CCGCa-UG-GCCGUGaugCGGCUcCUGA- -5'
25536 5' -57.9 NC_005337.1 + 82941 0.66 0.822532
Target:  5'- aGGCGUAUgGGguCggagaGCGgCGuGGACUg -3'
miRNA:   3'- -CCGCAUGgCCguGa----UGCgGCuCCUGA- -5'
25536 5' -57.9 NC_005337.1 + 127370 0.66 0.81402
Target:  5'- uGCGcGCCGGCGCggacccgcgcGCGCgCGAcauGGACg -3'
miRNA:   3'- cCGCaUGGCCGUGa---------UGCG-GCU---CCUGa -5'
25536 5' -57.9 NC_005337.1 + 45531 0.66 0.830876
Target:  5'- cGGCGUcgggaGCCGGUGCUGgagucggcgcCGCCGuGGugguCUu -3'
miRNA:   3'- -CCGCA-----UGGCCGUGAU----------GCGGCuCCu---GA- -5'
25536 5' -57.9 NC_005337.1 + 99121 0.66 0.821689
Target:  5'- cGCGaGCCGGCuCgucGCGCCGcucaucaugcucaAGGGCg -3'
miRNA:   3'- cCGCaUGGCCGuGa--UGCGGC-------------UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 92075 0.66 0.822532
Target:  5'- cGGCuGUACCGGCagcgGCUggacGCGCagcuGGACg -3'
miRNA:   3'- -CCG-CAUGGCCG----UGA----UGCGgcu-CCUGa -5'
25536 5' -57.9 NC_005337.1 + 43493 0.66 0.830876
Target:  5'- uGGCGUACuCGuGCAUgga--CGAGGACg -3'
miRNA:   3'- -CCGCAUG-GC-CGUGaugcgGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 131842 0.66 0.81402
Target:  5'- -aCGUACCuGCACUACGacggccccgaccCCGAGGuCg -3'
miRNA:   3'- ccGCAUGGcCGUGAUGC------------GGCUCCuGa -5'
25536 5' -57.9 NC_005337.1 + 84997 0.66 0.822532
Target:  5'- gGGCGcguucgccgaUGCCGuuCAC-GCGCuCGAGGACUa -3'
miRNA:   3'- -CCGC----------AUGGCc-GUGaUGCG-GCUCCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.