miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 5' -57.9 NC_005337.1 + 114828 1.1 0.001567
Target:  5'- aGGCGUACCGGCACUACGCCGAGGACUa -3'
miRNA:   3'- -CCGCAUGGCCGUGAUGCGGCUCCUGA- -5'
25536 5' -57.9 NC_005337.1 + 88256 0.83 0.110516
Target:  5'- uGCGUGCCGGCGCgccggcggGCGCCgcgGAGGACa -3'
miRNA:   3'- cCGCAUGGCCGUGa-------UGCGG---CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 979 0.8 0.170407
Target:  5'- cGGCGggGCUGGCGCggcGCGCgGAGGGCg -3'
miRNA:   3'- -CCGCa-UGGCCGUGa--UGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 979 0.8 0.170407
Target:  5'- cGGCGggGCUGGCGCggcGCGCgGAGGGCg -3'
miRNA:   3'- -CCGCa-UGGCCGUGa--UGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 68247 0.79 0.197719
Target:  5'- aGCGcgGCCGGCGCgugggcgaGCGUCGAGGACUu -3'
miRNA:   3'- cCGCa-UGGCCGUGa-------UGCGGCUCCUGA- -5'
25536 5' -57.9 NC_005337.1 + 10827 0.78 0.223323
Target:  5'- -cCGUGCUGGCGCUgcgGCGCgGAGGGCg -3'
miRNA:   3'- ccGCAUGGCCGUGA---UGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 127658 0.78 0.237721
Target:  5'- cGGCGUGCCGGCGCcucauccagauggGCGCCGAccuGGCg -3'
miRNA:   3'- -CCGCAUGGCCGUGa------------UGCGGCUc--CUGa -5'
25536 5' -57.9 NC_005337.1 + 97723 0.76 0.29631
Target:  5'- gGGUGgcucGCCGGCGCcgcccagcCGCCGGGGACg -3'
miRNA:   3'- -CCGCa---UGGCCGUGau------GCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 130667 0.75 0.317236
Target:  5'- gGGaCGUcuaCGGCGCUACGCCGcugGGGGCg -3'
miRNA:   3'- -CC-GCAug-GCCGUGAUGCGGC---UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 82359 0.75 0.331794
Target:  5'- aGCGUggccGCCGacuGCACgGCGCCGAGGGCc -3'
miRNA:   3'- cCGCA----UGGC---CGUGaUGCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 24563 0.75 0.331794
Target:  5'- cGGCGUuCCGGCGCcauCGCCaacggauccucGAGGACa -3'
miRNA:   3'- -CCGCAuGGCCGUGau-GCGG-----------CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 88733 0.75 0.334764
Target:  5'- cGGCGgcgccgacuccagcACCGGCucccgACGCCGAGGACc -3'
miRNA:   3'- -CCGCa-------------UGGCCGuga--UGCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 132763 0.75 0.346837
Target:  5'- uGGCGgacgcGCUGGCGC-GCGCCGAGGugACg -3'
miRNA:   3'- -CCGCa----UGGCCGUGaUGCGGCUCC--UGa -5'
25536 5' -57.9 NC_005337.1 + 45178 0.74 0.362362
Target:  5'- aGGCGUACCGGCugGCcgUGCCcGGGGCg -3'
miRNA:   3'- -CCGCAUGGCCG--UGauGCGGcUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 24621 0.74 0.370303
Target:  5'- cGUGUACCGGUACcugaugaGCGCCaacGAGGACa -3'
miRNA:   3'- cCGCAUGGCCGUGa------UGCGG---CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 96084 0.74 0.378363
Target:  5'- cGGCGUACacggGGCACgcggGCGCggcgGAGGACa -3'
miRNA:   3'- -CCGCAUGg---CCGUGa---UGCGg---CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 53830 0.74 0.378363
Target:  5'- aGCGUcuccucggaccgGCUGGCGCUgcGCGCCGcGGACg -3'
miRNA:   3'- cCGCA------------UGGCCGUGA--UGCGGCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 104390 0.74 0.386539
Target:  5'- cGGCGUA-CGGaCACaagcccuuCGCCGAGGACg -3'
miRNA:   3'- -CCGCAUgGCC-GUGau------GCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 15480 0.74 0.389843
Target:  5'- cGGCGcGCgCGGCACgacgGCGCCGccgccggcgucaucuAGGACg -3'
miRNA:   3'- -CCGCaUG-GCCGUGa---UGCGGC---------------UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 58271 0.74 0.393997
Target:  5'- cGUGUACCGGCGCacgGCGgccaccuucgccuUCGAGGACg -3'
miRNA:   3'- cCGCAUGGCCGUGa--UGC-------------GGCUCCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.