miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 5' -57.9 NC_005337.1 + 979 0.8 0.170407
Target:  5'- cGGCGggGCUGGCGCggcGCGCgGAGGGCg -3'
miRNA:   3'- -CCGCa-UGGCCGUGa--UGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 979 0.8 0.170407
Target:  5'- cGGCGggGCUGGCGCggcGCGCgGAGGGCg -3'
miRNA:   3'- -CCGCa-UGGCCGUGa--UGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 1093 0.68 0.691785
Target:  5'- gGGCuacaGCCGGCGCaGCGCCGccgccGGGAg- -3'
miRNA:   3'- -CCGca--UGGCCGUGaUGCGGC-----UCCUga -5'
25536 5' -57.9 NC_005337.1 + 1093 0.68 0.691785
Target:  5'- gGGCuacaGCCGGCGCaGCGCCGccgccGGGAg- -3'
miRNA:   3'- -CCGca--UGGCCGUGaUGCGGC-----UCCUga -5'
25536 5' -57.9 NC_005337.1 + 1205 0.72 0.512184
Target:  5'- aGGCGgccACCGGCGCcGCGUaCGcGGACg -3'
miRNA:   3'- -CCGCa--UGGCCGUGaUGCG-GCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 1435 0.67 0.769208
Target:  5'- uGCGaGCgCGGCG--GCGCCGAGGuGCg -3'
miRNA:   3'- cCGCaUG-GCCGUgaUGCGGCUCC-UGa -5'
25536 5' -57.9 NC_005337.1 + 6561 0.67 0.769208
Target:  5'- aGCGUggacGCCaGCGCUGCGCgGuccggauGGACg -3'
miRNA:   3'- cCGCA----UGGcCGUGAUGCGgCu------CCUGa -5'
25536 5' -57.9 NC_005337.1 + 8613 0.72 0.496892
Target:  5'- cGGCGUGCguccguacgcgucuuUGGCguucACguccGCGCCGAGGGCg -3'
miRNA:   3'- -CCGCAUG---------------GCCG----UGa---UGCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 10404 0.69 0.681797
Target:  5'- gGGCuGUGgaGGUgcgGCUGCGCCcagGAGGACg -3'
miRNA:   3'- -CCG-CAUggCCG---UGAUGCGG---CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 10574 0.7 0.591084
Target:  5'- gGGCGUGCCcagccgccGCACgGCGuCCGuGGACa -3'
miRNA:   3'- -CCGCAUGGc-------CGUGaUGC-GGCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 10827 0.78 0.223323
Target:  5'- -cCGUGCUGGCGCUgcgGCGCgGAGGGCg -3'
miRNA:   3'- ccGCAUGGCCGUGA---UGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 10990 0.67 0.750389
Target:  5'- cGCGUG-CGGCACggacACGgucaccauguCCGAGGGCUc -3'
miRNA:   3'- cCGCAUgGCCGUGa---UGC----------GGCUCCUGA- -5'
25536 5' -57.9 NC_005337.1 + 11536 0.7 0.621321
Target:  5'- cGGCGUGCCGGauCACggGCaCCaGGGACa -3'
miRNA:   3'- -CCGCAUGGCC--GUGa-UGcGGcUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 11922 0.68 0.721424
Target:  5'- uGGCGUccgaugcggcACCcgGGCGC-GCGCCGucgaGGGACg -3'
miRNA:   3'- -CCGCA----------UGG--CCGUGaUGCGGC----UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 12336 0.66 0.830876
Target:  5'- cGCGUGgUGGUGCaGCGCCGuccguccgcGGACg -3'
miRNA:   3'- cCGCAUgGCCGUGaUGCGGCu--------CCUGa -5'
25536 5' -57.9 NC_005337.1 + 12707 0.7 0.581055
Target:  5'- uGGCGU-CCGcGCGCgcgccGCGCuCGAGGAg- -3'
miRNA:   3'- -CCGCAuGGC-CGUGa----UGCG-GCUCCUga -5'
25536 5' -57.9 NC_005337.1 + 13006 0.69 0.681797
Target:  5'- cGGuCGUGCaGGC-CUGCGacgacuacuucaCCGAGGACg -3'
miRNA:   3'- -CC-GCAUGgCCGuGAUGC------------GGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 13791 0.68 0.740824
Target:  5'- gGGCGUcGCCGGaCACgugggcgAUGCCccGGACg -3'
miRNA:   3'- -CCGCA-UGGCC-GUGa------UGCGGcuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 14399 0.67 0.750389
Target:  5'- aGCaGUccGCCGGCGCUgaaccGCGCCGccAGGAg- -3'
miRNA:   3'- cCG-CA--UGGCCGUGA-----UGCGGC--UCCUga -5'
25536 5' -57.9 NC_005337.1 + 15480 0.74 0.389843
Target:  5'- cGGCGcGCgCGGCACgacgGCGCCGccgccggcgucaucuAGGACg -3'
miRNA:   3'- -CCGCaUG-GCCGUGa---UGCGGC---------------UCCUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.