miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 5' -57.9 NC_005337.1 + 23008 0.7 0.611224
Target:  5'- aGCaUGCugCGGCACUugcgccGCGUCGAGGACg -3'
miRNA:   3'- cCGcAUG--GCCGUGA------UGCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 52518 0.71 0.541356
Target:  5'- cGGCuGUACCGGCACggcAUGCU--GGACg -3'
miRNA:   3'- -CCG-CAUGGCCGUGa--UGCGGcuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 115631 0.71 0.561109
Target:  5'- cGGCGgcgGCgCGGcCGCcauCGCCGAGGAgUg -3'
miRNA:   3'- -CCGCa--UG-GCC-GUGau-GCGGCUCCUgA- -5'
25536 5' -57.9 NC_005337.1 + 30897 0.7 0.591084
Target:  5'- gGGuCGUAgcgaCGGCAggcgagccCUGCGCCGAuGGACUc -3'
miRNA:   3'- -CC-GCAUg---GCCGU--------GAUGCGGCU-CCUGA- -5'
25536 5' -57.9 NC_005337.1 + 10574 0.7 0.591084
Target:  5'- gGGCGUGCCcagccgccGCACgGCGuCCGuGGACa -3'
miRNA:   3'- -CCGCAUGGc-------CGUGaUGC-GGCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 63141 0.7 0.591084
Target:  5'- aGGUGcaguUGCCGGUGCcgcCGcCCGAGGACg -3'
miRNA:   3'- -CCGC----AUGGCCGUGau-GC-GGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 132308 0.7 0.591084
Target:  5'- cGGCGUGCaCGGCG--GCGgaGGGGGCg -3'
miRNA:   3'- -CCGCAUG-GCCGUgaUGCggCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 69471 0.7 0.601143
Target:  5'- gGGUGUuCCGGCgucgugccGCcGCGCgGAGGACc -3'
miRNA:   3'- -CCGCAuGGCCG--------UGaUGCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 77469 0.7 0.601143
Target:  5'- uGGCGUGCgCGGCGacGCGuCCcGGGGCg -3'
miRNA:   3'- -CCGCAUG-GCCGUgaUGC-GGcUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 67464 0.71 0.531566
Target:  5'- cGGCGcaGCCGcCGCUuCGUCGAGGGCg -3'
miRNA:   3'- -CCGCa-UGGCcGUGAuGCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 126445 0.72 0.512184
Target:  5'- cGCGUguaccACCGcGCGCUGuCGCgGAGGAUg -3'
miRNA:   3'- cCGCA-----UGGC-CGUGAU-GCGgCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 42719 0.73 0.436191
Target:  5'- aGGUGUACCGGUACguggccacggccGCGCCGAGcGuGCg -3'
miRNA:   3'- -CCGCAUGGCCGUGa-----------UGCGGCUC-C-UGa -5'
25536 5' -57.9 NC_005337.1 + 68247 0.79 0.197719
Target:  5'- aGCGcgGCCGGCGCgugggcgaGCGUCGAGGACUu -3'
miRNA:   3'- cCGCa-UGGCCGUGa-------UGCGGCUCCUGA- -5'
25536 5' -57.9 NC_005337.1 + 24563 0.75 0.331794
Target:  5'- cGGCGUuCCGGCGCcauCGCCaacggauccucGAGGACa -3'
miRNA:   3'- -CCGCAuGGCCGUGau-GCGG-----------CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 45178 0.74 0.362362
Target:  5'- aGGCGUACCGGCugGCcgUGCCcGGGGCg -3'
miRNA:   3'- -CCGCAUGGCCG--UGauGCGGcUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 24621 0.74 0.370303
Target:  5'- cGUGUACCGGUACcugaugaGCGCCaacGAGGACa -3'
miRNA:   3'- cCGCAUGGCCGUGa------UGCGG---CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 96084 0.74 0.378363
Target:  5'- cGGCGUACacggGGCACgcggGCGCggcgGAGGACa -3'
miRNA:   3'- -CCGCAUGg---CCGUGa---UGCGg---CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 104390 0.74 0.386539
Target:  5'- cGGCGUA-CGGaCACaagcccuuCGCCGAGGACg -3'
miRNA:   3'- -CCGCAUgGCC-GUGau------GCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 15480 0.74 0.389843
Target:  5'- cGGCGcGCgCGGCACgacgGCGCCGccgccggcgucaucuAGGACg -3'
miRNA:   3'- -CCGCaUG-GCCGUGa---UGCGGC---------------UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 48419 0.74 0.394832
Target:  5'- cGGCGUACUGGCGCUGUG-CGuGGugUa -3'
miRNA:   3'- -CCGCAUGGCCGUGAUGCgGCuCCugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.