Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25537 | 5' | -63 | NC_005337.1 | + | 132674 | 0.66 | 0.628367 |
Target: 5'- aCGGGAUCacgCCCCUGGacaacaucgucGCGCacaaccuGGGCCg -3' miRNA: 3'- -GCCCUAG---GGGGGCCacu--------UGCG-------CCCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 30365 | 0.66 | 0.627397 |
Target: 5'- gCGGGAUCUCgaCCUGGUacuucuugcaggugaGGAUGuCGaGGCCg -3' miRNA: 3'- -GCCCUAGGG--GGGCCA---------------CUUGC-GC-CCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 117325 | 0.66 | 0.623517 |
Target: 5'- gGGGAUCgCCgucaCGGUGGcgacggccaACGUcGGCCg -3' miRNA: 3'- gCCCUAGgGGg---GCCACU---------UGCGcCCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 10600 | 0.66 | 0.623517 |
Target: 5'- --cGGUCCCgCCgCGGggGAGCGgCGGcGCCa -3' miRNA: 3'- gccCUAGGG-GG-GCCa-CUUGC-GCC-CGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 31617 | 0.66 | 0.613822 |
Target: 5'- aGGGG-CCgCCCUGcauGGCGCGGGCg -3' miRNA: 3'- gCCCUaGG-GGGGCcacUUGCGCCCGg -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 98697 | 0.66 | 0.604139 |
Target: 5'- gGGGAUCCgCCUCGcuaGGcauccgcucGCGCGGcGCCc -3' miRNA: 3'- gCCCUAGG-GGGGCca-CU---------UGCGCC-CGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 89896 | 0.66 | 0.575228 |
Target: 5'- aGGc--CCCauCCCGGUGGGCGgCGGGgCg -3' miRNA: 3'- gCCcuaGGG--GGGCCACUUGC-GCCCgG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 55935 | 0.66 | 0.575228 |
Target: 5'- uCGaGAccgCgCCCCGGcUGGaccugcagcuugGCGCGGGCCa -3' miRNA: 3'- -GCcCUa--GgGGGGCC-ACU------------UGCGCCCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 108741 | 0.66 | 0.575228 |
Target: 5'- -cGGAUUCUCgCGGc--GCGUGGGCCg -3' miRNA: 3'- gcCCUAGGGGgGCCacuUGCGCCCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 125132 | 0.66 | 0.575228 |
Target: 5'- aGGaGGUCCUCCCGGccguCGCGcGGUa -3' miRNA: 3'- gCC-CUAGGGGGGCCacuuGCGC-CCGg -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 108958 | 0.67 | 0.556125 |
Target: 5'- uGGGGUCguacacgCgCCGGUcGACGCGcGGCCc -3' miRNA: 3'- gCCCUAGg------GgGGCCAcUUGCGC-CCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 108166 | 0.67 | 0.537211 |
Target: 5'- gCGGaGAUCgCCgCGGUGGACauccgGCGGcGCUu -3' miRNA: 3'- -GCC-CUAGgGGgGCCACUUG-----CGCC-CGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 111123 | 0.67 | 0.537211 |
Target: 5'- gCGGGucagGUUCUCCCGGaggaagGGGCGCauGGCCg -3' miRNA: 3'- -GCCC----UAGGGGGGCCa-----CUUGCGc-CCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 34130 | 0.67 | 0.518524 |
Target: 5'- aGGGAgaaCUCCCGcacGAACGCGGGgUg -3' miRNA: 3'- gCCCUag-GGGGGCca-CUUGCGCCCgG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 68122 | 0.68 | 0.509277 |
Target: 5'- uCGGGGUCgCggggCCGGUGGccGCGCGcGCCc -3' miRNA: 3'- -GCCCUAGgGg---GGCCACU--UGCGCcCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 68465 | 0.68 | 0.503762 |
Target: 5'- cCGGGAUCUCCUgcuucugcagcaugaCGGUGcgcaccgggGGCGCGGacagcGCCg -3' miRNA: 3'- -GCCCUAGGGGG---------------GCCAC---------UUGCGCC-----CGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 3192 | 0.68 | 0.5001 |
Target: 5'- gGGGcGUCUUCCCcGUGAACGagcgcaGGGUCa -3' miRNA: 3'- gCCC-UAGGGGGGcCACUUGCg-----CCCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 112071 | 0.68 | 0.487377 |
Target: 5'- uCGcGGAUgCUCUCGGUGAGCccgcugugccgcaCGGGCCc -3' miRNA: 3'- -GC-CCUAgGGGGGCCACUUGc------------GCCCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 84064 | 0.68 | 0.481971 |
Target: 5'- uGGGGUU-CCCCGuGUGcaGACGCGcGCCg -3' miRNA: 3'- gCCCUAGgGGGGC-CAC--UUGCGCcCGG- -5' |
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25537 | 5' | -63 | NC_005337.1 | + | 102981 | 0.68 | 0.481971 |
Target: 5'- aCGGGuacuucugCCCCUCGGacgugcccGAGCGCGGcCCg -3' miRNA: 3'- -GCCCua------GGGGGGCCa-------CUUGCGCCcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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