miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 5' -53.5 NC_005337.1 + 132478 0.78 0.420616
Target:  5'- aGGGUucccgugCGGCGgcAGGAGGGACugGCGGCCg -3'
miRNA:   3'- -UCCG-------GCUGCuuUUCUUCCUG--UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 132389 0.65 0.967405
Target:  5'- gAGGCCGcCGAGugcgcauagcgcugGuGAAcagcGGACacGCGGCCa -3'
miRNA:   3'- -UCCGGCuGCUU--------------UuCUU----CCUG--UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 132317 0.67 0.93623
Target:  5'- cGG-CGGCGGAG---GGGGCGCuGGCCc -3'
miRNA:   3'- uCCgGCUGCUUUucuUCCUGUG-CCGG- -5'
25540 5' -53.5 NC_005337.1 + 132006 0.74 0.608485
Target:  5'- cGGCC--CGA--GGAcGGACACGGCCu -3'
miRNA:   3'- uCCGGcuGCUuuUCUuCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 131893 0.71 0.767534
Target:  5'- gAGGCgGGCGcgcacguGGACGCGGUCg -3'
miRNA:   3'- -UCCGgCUGCuuuucuuCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 128432 0.66 0.950048
Target:  5'- cAGGCCaGCGA------GGuCGCGGCCg -3'
miRNA:   3'- -UCCGGcUGCUuuucuuCCuGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 127254 0.68 0.88855
Target:  5'- cGGCCuGAUGcuGGAGgcGGGCGCGGaCg -3'
miRNA:   3'- uCCGG-CUGCu-UUUCuuCCUGUGCCgG- -5'
25540 5' -53.5 NC_005337.1 + 125644 0.68 0.916719
Target:  5'- cGGCaCGGCGAgugguacaugcgucaGAAGGucucgccGGACAUGGCg -3'
miRNA:   3'- uCCG-GCUGCU---------------UUUCUu------CCUGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 124811 0.7 0.842938
Target:  5'- gGGGCCGcaGCGAGGAGGugcuccgcacGGGCAucgaggcgcagaUGGCCg -3'
miRNA:   3'- -UCCGGC--UGCUUUUCUu---------CCUGU------------GCCGG- -5'
25540 5' -53.5 NC_005337.1 + 124805 0.71 0.761745
Target:  5'- uGGGCCGGCGGu-----GGACGC-GCCg -3'
miRNA:   3'- -UCCGGCUGCUuuucuuCCUGUGcCGG- -5'
25540 5' -53.5 NC_005337.1 + 124278 0.78 0.421512
Target:  5'- cGGaCGACGAGAacccugccguGGccGAGGACGCGGCCu -3'
miRNA:   3'- uCCgGCUGCUUU----------UC--UUCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 124020 0.69 0.881503
Target:  5'- -cGCCGAUGGAGGcgccccgcGAAGGcCGCGcGCCu -3'
miRNA:   3'- ucCGGCUGCUUUU--------CUUCCuGUGC-CGG- -5'
25540 5' -53.5 NC_005337.1 + 123592 0.68 0.887855
Target:  5'- uGGCCGccuuCGAGGAGAAcccgccgccggccGGcGCGCGGUCc -3'
miRNA:   3'- uCCGGCu---GCUUUUCUU-------------CC-UGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 123568 0.66 0.948765
Target:  5'- uGGCCGugGAcgcGGAGuGCcgcugcugcgagcuGCGGCCg -3'
miRNA:   3'- uCCGGCugCUuuuCUUCcUG--------------UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 123276 0.66 0.95417
Target:  5'- cAGGCCuggGACGAGcAGcuGGugGCGaCCg -3'
miRNA:   3'- -UCCGG---CUGCUUuUCuuCCugUGCcGG- -5'
25540 5' -53.5 NC_005337.1 + 122777 0.66 0.950048
Target:  5'- uGGCCG-CGGAucau-GGACgcguugcugcgcGCGGCCa -3'
miRNA:   3'- uCCGGCuGCUUuucuuCCUG------------UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 122451 0.66 0.966447
Target:  5'- -cGCCGacuucaucgcgcaguGCGAGGcaGAGGugGCGGUCa -3'
miRNA:   3'- ucCGGC---------------UGCUUUucUUCCugUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 121838 0.66 0.95417
Target:  5'- cGGCCGACGugcucguGAAGucGGugGgcGCCa -3'
miRNA:   3'- uCCGGCUGCu------UUUCuuCCugUgcCGG- -5'
25540 5' -53.5 NC_005337.1 + 120618 0.66 0.959546
Target:  5'- gAGGCCGGC---AAGAcGGGCGucacgaucgaggaggUGGCCc -3'
miRNA:   3'- -UCCGGCUGcuuUUCUuCCUGU---------------GCCGG- -5'
25540 5' -53.5 NC_005337.1 + 119814 0.66 0.965138
Target:  5'- aGGGUgGugGAGAu---GGACAUugagGGCCu -3'
miRNA:   3'- -UCCGgCugCUUUucuuCCUGUG----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.