miRNA display CGI


Results 1 - 20 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 5' -53.5 NC_005337.1 + 113635 1.12 0.00289
Target:  5'- gAGGCCGACGAAAAGAAGGACACGGCCu -3'
miRNA:   3'- -UCCGGCUGCUUUUCUUCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 89057 0.74 0.629317
Target:  5'- aAGGCCGcguccgccGCGAGAcucauGAGcgacagcgccccGGGCACGGCCa -3'
miRNA:   3'- -UCCGGC--------UGCUUUu----CUU------------CCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 37309 0.73 0.660562
Target:  5'- cGGCCG-CGAGGAGcuGGucgcGCGCGGCg -3'
miRNA:   3'- uCCGGCuGCUUUUCuuCC----UGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 119814 0.66 0.965138
Target:  5'- aGGGUgGugGAGAu---GGACAUugagGGCCu -3'
miRNA:   3'- -UCCGgCugCUUUucuuCCUGUG----CCGG- -5'
25540 5' -53.5 NC_005337.1 + 124278 0.78 0.421512
Target:  5'- cGGaCGACGAGAacccugccguGGccGAGGACGCGGCCu -3'
miRNA:   3'- uCCgGCUGCUUU----------UC--UUCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 108614 0.78 0.421512
Target:  5'- aGGGCCG-CGGcgccgagguGGAGAucGACGCGGCCg -3'
miRNA:   3'- -UCCGGCuGCU---------UUUCUucCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 68945 0.77 0.458293
Target:  5'- cAGGCCGACGAc--GcGGGACAgCGGCa -3'
miRNA:   3'- -UCCGGCUGCUuuuCuUCCUGU-GCCGg -5'
25540 5' -53.5 NC_005337.1 + 89942 0.77 0.467754
Target:  5'- aGGGCCGcGCGGAua-AAGG-CGCGGCCg -3'
miRNA:   3'- -UCCGGC-UGCUUuucUUCCuGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 1061 0.75 0.556852
Target:  5'- gAGGCCGGCGggGgcGGAcugcGGGACggaGCGGgCu -3'
miRNA:   3'- -UCCGGCUGCuuU--UCU----UCCUG---UGCCgG- -5'
25540 5' -53.5 NC_005337.1 + 72999 0.74 0.629317
Target:  5'- uGGcGCgCGGCGcgaAGAAGAAGGACA-GGCCc -3'
miRNA:   3'- -UC-CG-GCUGC---UUUUCUUCCUGUgCCGG- -5'
25540 5' -53.5 NC_005337.1 + 74900 0.75 0.567098
Target:  5'- -aGCCGGCGGAucacauAAGAAcuccGGAgGCGGCCg -3'
miRNA:   3'- ucCGGCUGCUU------UUCUU----CCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 76234 0.76 0.51647
Target:  5'- -aGCgCGGCGuuGAGGAGcGCACGGCCg -3'
miRNA:   3'- ucCG-GCUGCuuUUCUUCcUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 88268 0.81 0.266954
Target:  5'- -cGCCGGCGGGcgccgcGGAGGACAUGGCCg -3'
miRNA:   3'- ucCGGCUGCUUuu----CUUCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 18392 0.75 0.57121
Target:  5'- gGGGCuCGACGAcaucgucuguugcucGAGGGAGGGCggcuggGCGGCg -3'
miRNA:   3'- -UCCG-GCUGCU---------------UUUCUUCCUG------UGCCGg -5'
25540 5' -53.5 NC_005337.1 + 842 0.79 0.369827
Target:  5'- cGGGCuCGACGAAGgcggcGGGcagcgcGGGCGCGGCCg -3'
miRNA:   3'- -UCCG-GCUGCUUU-----UCUu-----CCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 33687 0.77 0.476354
Target:  5'- gAGGCCGGCGGgcgccaccuccucGAAGGugguggcgccgAGGAUGCGGUCg -3'
miRNA:   3'- -UCCGGCUGCU-------------UUUCU-----------UCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 132006 0.74 0.608485
Target:  5'- cGGCC--CGA--GGAcGGACACGGCCu -3'
miRNA:   3'- uCCGGcuGCUuuUCUuCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 72829 0.73 0.650159
Target:  5'- cGGCCGA-GAuuAAGAAGGGCgucuucuccuGCGGCUg -3'
miRNA:   3'- uCCGGCUgCUu-UUCUUCCUG----------UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 115514 0.78 0.403801
Target:  5'- gAGGUCGACGAccuGGAGGAGGGCuACGaGCa -3'
miRNA:   3'- -UCCGGCUGCU---UUUCUUCCUG-UGC-CGg -5'
25540 5' -53.5 NC_005337.1 + 3829 0.77 0.439683
Target:  5'- cAGGUCGACGAGcucGGAGGGaagacuGCACGGaCCg -3'
miRNA:   3'- -UCCGGCUGCUUu--UCUUCC------UGUGCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.