miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 5' -57.3 NC_005337.1 + 107730 1.08 0.002316
Target:  5'- gCAAGGACGACGUCAGCCUGGCGGACAu -3'
miRNA:   3'- -GUUCCUGCUGCAGUCGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 25707 0.69 0.650142
Target:  5'- gGAGGAgCGAcuCGUCAGCCUucUGGACAa -3'
miRNA:   3'- gUUCCU-GCU--GCAGUCGGAccGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 71728 0.69 0.650142
Target:  5'- -cAGGugcgcgacgacGCGACgGUCAGCCUgucGGUGGGCGa -3'
miRNA:   3'- guUCC-----------UGCUG-CAGUCGGA---CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 66565 0.66 0.848639
Target:  5'- gGAGGACGACGgguccgagauagacgCccaggagacGGCCUGGUGGcugACGg -3'
miRNA:   3'- gUUCCUGCUGCa--------------G---------UCGGACCGCC---UGU- -5'
25552 5' -57.3 NC_005337.1 + 122349 0.74 0.382587
Target:  5'- -cGGGACGACGUCGGCaacCUGcUGGGCAg -3'
miRNA:   3'- guUCCUGCUGCAGUCG---GACcGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 1051 0.74 0.407945
Target:  5'- --cGGGCGGCGggaGGCCggcgggGGCGGACu -3'
miRNA:   3'- guuCCUGCUGCag-UCGGa-----CCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 105905 0.73 0.416629
Target:  5'- aAGGGGCGGC-UgAcCCUGGCGGACAa -3'
miRNA:   3'- gUUCCUGCUGcAgUcGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 82517 0.73 0.461677
Target:  5'- -cGGGGCGGcCGUCcagcGCCagGGCGGGCAg -3'
miRNA:   3'- guUCCUGCU-GCAGu---CGGa-CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 24857 0.7 0.609257
Target:  5'- uCGAGGACGugGUCGcgcacGCCgugucuGUGGACGg -3'
miRNA:   3'- -GUUCCUGCugCAGU-----CGGac----CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 114170 0.69 0.639922
Target:  5'- gGAGGACG-CGcUCucGCUgaUGGCGGACGg -3'
miRNA:   3'- gUUCCUGCuGC-AGu-CGG--ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 48395 0.7 0.613342
Target:  5'- gGAGGGCucCGUguGCCcgaucgcgcccgacaUGGCGGACGc -3'
miRNA:   3'- gUUCCUGcuGCAguCGG---------------ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 115074 0.71 0.527748
Target:  5'- --cGGACGACGUCuGCgUGGgcaucguggagucCGGACAc -3'
miRNA:   3'- guuCCUGCUGCAGuCGgACC-------------GCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 52577 0.79 0.198613
Target:  5'- gCGGGGACGGCGcggCGGCgCUGGCGGcCAa -3'
miRNA:   3'- -GUUCCUGCUGCa--GUCG-GACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 13283 0.7 0.619472
Target:  5'- cCGAGGGCGAUGcgCAGgagGGCGGGCu -3'
miRNA:   3'- -GUUCCUGCUGCa-GUCggaCCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 42961 0.77 0.259633
Target:  5'- aGGGGAcCGugGcCAGCCUGGCGG-CGu -3'
miRNA:   3'- gUUCCU-GCugCaGUCGGACCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 41600 0.72 0.489905
Target:  5'- gCGAGGGCGugGUCguggcgaaggaGGCCgUGGUGcGACGc -3'
miRNA:   3'- -GUUCCUGCugCAG-----------UCGG-ACCGC-CUGU- -5'
25552 5' -57.3 NC_005337.1 + 82616 0.69 0.639922
Target:  5'- cCAGGGGCGACGgcgGGCgCUGGCGaccGCGg -3'
miRNA:   3'- -GUUCCUGCUGCag-UCG-GACCGCc--UGU- -5'
25552 5' -57.3 NC_005337.1 + 32099 0.69 0.650142
Target:  5'- gCGGGGAUGACGU--GCgaGGCGGAg- -3'
miRNA:   3'- -GUUCCUGCUGCAguCGgaCCGCCUgu -5'
25552 5' -57.3 NC_005337.1 + 108626 0.76 0.298948
Target:  5'- cCGAGGuggagauCGACG-CGGCCgUGGCGGGCGa -3'
miRNA:   3'- -GUUCCu------GCUGCaGUCGG-ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 95259 0.73 0.415755
Target:  5'- --cGGAUGGCGuucagggUCAGCCggugGGUGGACAu -3'
miRNA:   3'- guuCCUGCUGC-------AGUCGGa---CCGCCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.