miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 5' -53.6 NC_005337.1 + 20058 0.66 0.95521
Target:  5'- cCG-GCGCGUACAUCUUcCGagggagGUGCUUGg -3'
miRNA:   3'- -GCgCGUGCAUGUGGAA-GCg-----CAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 42555 0.66 0.961892
Target:  5'- gGCGCugGUGCGgCUgcggcuggaggcCGCGggGCUCu -3'
miRNA:   3'- gCGCGugCAUGUgGAa-----------GCGCa-UGAGc -5'
25579 5' -53.6 NC_005337.1 + 72434 0.66 0.96259
Target:  5'- gGCGUgaGCGUGCuCCg-CGaCGUGCUCa -3'
miRNA:   3'- gCGCG--UGCAUGuGGaaGC-GCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 9948 0.66 0.959382
Target:  5'- uCGCGcCGCGUccaugaGCGCCUgcgccgcgacgaggcCGCGUcCUCGg -3'
miRNA:   3'- -GCGC-GUGCA------UGUGGAa--------------GCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 6344 0.66 0.959014
Target:  5'- uCGCGCAC---CGCgUcCGCGUACUUGc -3'
miRNA:   3'- -GCGCGUGcauGUGgAaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 32250 0.66 0.951174
Target:  5'- gGCGUACGcgaucACGCCcgCGCGcugcacgaugUACUCGg -3'
miRNA:   3'- gCGCGUGCa----UGUGGaaGCGC----------AUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 121812 0.66 0.956759
Target:  5'- gGCGCugGacgaguucgguaugACGCCggcCGaCGUGCUCGu -3'
miRNA:   3'- gCGCGugCa-------------UGUGGaa-GC-GCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 7333 0.66 0.961186
Target:  5'- uCGCGCGCGUucacguccGCGCCcgccuccagcaGCGU-CUCGa -3'
miRNA:   3'- -GCGCGUGCA--------UGUGGaag--------CGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 38364 0.66 0.951174
Target:  5'- gCGCGCGCGgcCGCCgucgcCGCGaGCaCGa -3'
miRNA:   3'- -GCGCGUGCauGUGGaa---GCGCaUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 104135 0.66 0.951174
Target:  5'- cCGCGCGCGUGgAg---CGCGUGCaggCGg -3'
miRNA:   3'- -GCGCGUGCAUgUggaaGCGCAUGa--GC- -5'
25579 5' -53.6 NC_005337.1 + 58406 0.66 0.959014
Target:  5'- gGUGCAugaUGUACGCCaUCGCGgcggcgccGCUCc -3'
miRNA:   3'- gCGCGU---GCAUGUGGaAGCGCa-------UGAGc -5'
25579 5' -53.6 NC_005337.1 + 565 0.66 0.959014
Target:  5'- gGcCGCGCGUACGCCgcggccgCGCGgaaGC-CGc -3'
miRNA:   3'- gC-GCGUGCAUGUGGaa-----GCGCa--UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 129509 0.66 0.959014
Target:  5'- -cCGCGCGU-CAUCgaCGCGcUGCUCGc -3'
miRNA:   3'- gcGCGUGCAuGUGGaaGCGC-AUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 65512 0.66 0.951174
Target:  5'- cCGCguggaGCugGUGaACCUggugCGCGUgcGCUCGa -3'
miRNA:   3'- -GCG-----CGugCAUgUGGAa---GCGCA--UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 72276 0.66 0.951174
Target:  5'- aGaCGCGCGUGC-CCUUCcuGC-UGCUCu -3'
miRNA:   3'- gC-GCGUGCAUGuGGAAG--CGcAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 131237 0.66 0.95521
Target:  5'- uGCGCugGUucgagucgcGCAaggacucggaguCCUUCGUGcgGCUCGu -3'
miRNA:   3'- gCGCGugCA---------UGU------------GGAAGCGCa-UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 30832 0.66 0.951174
Target:  5'- gGCaGCGCGUcgAgACCagCGCGUuCUCGg -3'
miRNA:   3'- gCG-CGUGCA--UgUGGaaGCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 26499 0.66 0.95521
Target:  5'- cCGCGcCAUGUccauacACACCUccagcgaguaguUCGCGUACa-- -3'
miRNA:   3'- -GCGC-GUGCA------UGUGGA------------AGCGCAUGagc -5'
25579 5' -53.6 NC_005337.1 + 21136 0.66 0.95521
Target:  5'- gCGaacaGCACGUAcCGCag-CGCGUccuGCUCGa -3'
miRNA:   3'- -GCg---CGUGCAU-GUGgaaGCGCA---UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 89922 0.66 0.951174
Target:  5'- uCGCGCACGUACuuggUCUUCaGCGcgGCgUUGa -3'
miRNA:   3'- -GCGCGUGCAUGu---GGAAG-CGCa-UG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.