miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 5' -53.6 NC_005337.1 + 565 0.66 0.959014
Target:  5'- gGcCGCGCGUACGCCgcggccgCGCGgaaGC-CGc -3'
miRNA:   3'- gC-GCGUGCAUGUGGaa-----GCGCa--UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 565 0.66 0.959014
Target:  5'- gGcCGCGCGUACGCCgcggccgCGCGgaaGC-CGc -3'
miRNA:   3'- gC-GCGUGCAUGUGGaa-----GCGCa--UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 1379 0.75 0.562272
Target:  5'- aGCGCGgGUACACCgccgagaGCGUuuGCUCGu -3'
miRNA:   3'- gCGCGUgCAUGUGGaag----CGCA--UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 1516 0.69 0.853944
Target:  5'- gCGCGCcagcGCGUcCGCCacUUCGUGUGCgggCGg -3'
miRNA:   3'- -GCGCG----UGCAuGUGG--AAGCGCAUGa--GC- -5'
25579 5' -53.6 NC_005337.1 + 2170 0.69 0.861756
Target:  5'- cCGCGCACG-GCGCCgaCGCGcACggCGc -3'
miRNA:   3'- -GCGCGUGCaUGUGGaaGCGCaUGa-GC- -5'
25579 5' -53.6 NC_005337.1 + 3246 0.69 0.853944
Target:  5'- gGCGCGCGcACGCCUugUCGUugcgGUGCgCGg -3'
miRNA:   3'- gCGCGUGCaUGUGGA--AGCG----CAUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 3395 0.66 0.967222
Target:  5'- aGCGCGCGUGCGCCaUCugguaguaggaGCGguugacguacccgcGCUUGg -3'
miRNA:   3'- gCGCGUGCAUGUGGaAG-----------CGCa-------------UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 4129 0.69 0.876738
Target:  5'- aGCGCGCGaGCGCCagCGCGcGCg-- -3'
miRNA:   3'- gCGCGUGCaUGUGGaaGCGCaUGagc -5'
25579 5' -53.6 NC_005337.1 + 5211 0.69 0.861756
Target:  5'- aGCaGCGCGacCACCUcuccgacacaCGCGUGCUCGg -3'
miRNA:   3'- gCG-CGUGCauGUGGAa---------GCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 5500 0.66 0.951174
Target:  5'- gCGCGCAccCGUGCuACCaggUUCGCGcGC-CGg -3'
miRNA:   3'- -GCGCGU--GCAUG-UGG---AAGCGCaUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 5593 0.69 0.872335
Target:  5'- aGCGCGCGUGC-CCggcgggggacgaGCGU-CUCGg -3'
miRNA:   3'- gCGCGUGCAUGuGGaag---------CGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 5994 0.72 0.716541
Target:  5'- gCGCGCGCGUugcAgACCgcCGCGUGCagCGg -3'
miRNA:   3'- -GCGCGUGCA---UgUGGaaGCGCAUGa-GC- -5'
25579 5' -53.6 NC_005337.1 + 6237 0.69 0.869356
Target:  5'- uGgGCACGUGCacgGCCUUgGCcgACUCGu -3'
miRNA:   3'- gCgCGUGCAUG---UGGAAgCGcaUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 6344 0.66 0.959014
Target:  5'- uCGCGCAC---CGCgUcCGCGUACUUGc -3'
miRNA:   3'- -GCGCGUGcauGUGgAaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 6903 0.67 0.942389
Target:  5'- gCGCGCGCGgguccGCGCCggCGCGcaGCaUCa -3'
miRNA:   3'- -GCGCGUGCa----UGUGGaaGCGCa-UG-AGc -5'
25579 5' -53.6 NC_005337.1 + 7333 0.66 0.961186
Target:  5'- uCGCGCGCGUucacguccGCGCCcgccuccagcaGCGU-CUCGa -3'
miRNA:   3'- -GCGCGUGCA--------UGUGGaag--------CGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 7850 0.77 0.46383
Target:  5'- aCGCGCACGcGCGCCgUCGCGcGC-CGg -3'
miRNA:   3'- -GCGCGUGCaUGUGGaAGCGCaUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 8933 0.68 0.903978
Target:  5'- cCGcCGUACGggACAUUgUCGuCGUACUCGg -3'
miRNA:   3'- -GC-GCGUGCa-UGUGGaAGC-GCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 9948 0.66 0.959382
Target:  5'- uCGCGcCGCGUccaugaGCGCCUgcgccgcgacgaggcCGCGUcCUCGg -3'
miRNA:   3'- -GCGC-GUGCA------UGUGGAa--------------GCGCAuGAGC- -5'
25579 5' -53.6 NC_005337.1 + 10245 0.68 0.916174
Target:  5'- gGCGCGCG---GCCUUCGCGggGCg-- -3'
miRNA:   3'- gCGCGUGCaugUGGAAGCGCa-UGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.