miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 5' -53.6 NC_005337.1 + 94351 1.1 0.004246
Target:  5'- cCGCGCACGUACACCUUCGCGUACUCGa -3'
miRNA:   3'- -GCGCGUGCAUGUGGAAGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 32131 0.82 0.258892
Target:  5'- aGCGUguccACGUACACCUcgGCGUACUCGa -3'
miRNA:   3'- gCGCG----UGCAUGUGGAagCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 39938 0.79 0.375159
Target:  5'- aCGUGCGCGgcggGCGCCUcgCGCGggcGCUCGa -3'
miRNA:   3'- -GCGCGUGCa---UGUGGAa-GCGCa--UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 7850 0.77 0.46383
Target:  5'- aCGCGCACGcGCGCCgUCGCGcGC-CGg -3'
miRNA:   3'- -GCGCGUGCaUGUGGaAGCGCaUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 42743 0.77 0.470445
Target:  5'- cCGCGCcgaGCGUgcggugcgggucccGCGCgUUCGUGUGCUCGg -3'
miRNA:   3'- -GCGCG---UGCA--------------UGUGgAAGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 103950 0.76 0.502252
Target:  5'- cCGCgaGCGCGUGCGcuCCUcCGCGUACUCc -3'
miRNA:   3'- -GCG--CGUGCAUGU--GGAaGCGCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 58740 0.76 0.512077
Target:  5'- gGCGCGgGUGCACCggagcagcagcUUCGCGUACcagUCGu -3'
miRNA:   3'- gCGCGUgCAUGUGG-----------AAGCGCAUG---AGC- -5'
25579 5' -53.6 NC_005337.1 + 75763 0.76 0.52198
Target:  5'- uGCGCAgGcACACCUcCGUGUACUUGc -3'
miRNA:   3'- gCGCGUgCaUGUGGAaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 132104 0.75 0.552109
Target:  5'- cCGUGCGCGUcgGCGCCgugCGCGgcagGCUCc -3'
miRNA:   3'- -GCGCGUGCA--UGUGGaa-GCGCa---UGAGc -5'
25579 5' -53.6 NC_005337.1 + 1379 0.75 0.562272
Target:  5'- aGCGCGgGUACACCgccgagaGCGUuuGCUCGu -3'
miRNA:   3'- gCGCGUgCAUGUGGaag----CGCA--UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 12697 0.75 0.582741
Target:  5'- gGCGCGCGUACAUg--CG-GUGCUCGg -3'
miRNA:   3'- gCGCGUGCAUGUGgaaGCgCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 95926 0.75 0.593033
Target:  5'- uCGUGUGCGUgauGCGCag-CGCGUACUCGc -3'
miRNA:   3'- -GCGCGUGCA---UGUGgaaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 117244 0.74 0.613699
Target:  5'- cCGCuGC-CGUGCGCCUUCGCGcgGCcCGc -3'
miRNA:   3'- -GCG-CGuGCAUGUGGAAGCGCa-UGaGC- -5'
25579 5' -53.6 NC_005337.1 + 132962 0.74 0.624057
Target:  5'- uCGUGCACGUGCACCUgguggUCGUG-AC-CGu -3'
miRNA:   3'- -GCGCGUGCAUGUGGA-----AGCGCaUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 126868 0.74 0.624057
Target:  5'- aCGC-CGC-UGCACCUcUGCGUGCUCGu -3'
miRNA:   3'- -GCGcGUGcAUGUGGAaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 18979 0.74 0.634422
Target:  5'- gGCGCGUGUACuCCUcCGCGaGCUCGg -3'
miRNA:   3'- gCGCGUGCAUGuGGAaGCGCaUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 104562 0.74 0.644784
Target:  5'- gCGCGCGCGUgcGCGCCUcgCGCGUccguccGgUCGu -3'
miRNA:   3'- -GCGCGUGCA--UGUGGAa-GCGCA------UgAGC- -5'
25579 5' -53.6 NC_005337.1 + 46750 0.74 0.644784
Target:  5'- gGCuCAUGUACAUCUUCGCuGcGCUCGg -3'
miRNA:   3'- gCGcGUGCAUGUGGAAGCG-CaUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 17420 0.73 0.664438
Target:  5'- gGCGCGCGUucgucuGCACCaugUCGaugucccCGUACUCGa -3'
miRNA:   3'- gCGCGUGCA------UGUGGa--AGC-------GCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 22316 0.73 0.66547
Target:  5'- gCGCGCACGcucUACGag--CGCGUGCUCa -3'
miRNA:   3'- -GCGCGUGC---AUGUggaaGCGCAUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.