miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25579 5' -53.6 NC_005337.1 + 94798 0.72 0.726571
Target:  5'- gCGCGCGCGU-CGCCggcacggaggCGuCGUACUCc -3'
miRNA:   3'- -GCGCGUGCAuGUGGaa--------GC-GCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 17420 0.73 0.664438
Target:  5'- gGCGCGCGUucgucuGCACCaugUCGaugucccCGUACUCGa -3'
miRNA:   3'- gCGCGUGCA------UGUGGa--AGC-------GCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 22316 0.73 0.66547
Target:  5'- gCGCGCACGcucUACGag--CGCGUGCUCa -3'
miRNA:   3'- -GCGCGUGC---AUGUggaaGCGCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 91754 0.73 0.675776
Target:  5'- aCGCGCGCGUGCGCC-UCGaa-GCUgGa -3'
miRNA:   3'- -GCGCGUGCAUGUGGaAGCgcaUGAgC- -5'
25579 5' -53.6 NC_005337.1 + 128181 0.73 0.675776
Target:  5'- cCGCG-ACGUACACC-UCGUGcaaggACUCGa -3'
miRNA:   3'- -GCGCgUGCAUGUGGaAGCGCa----UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 109170 0.73 0.686045
Target:  5'- cCGCGCGCGccGCGCCg-CGCGggcggaGCUCGg -3'
miRNA:   3'- -GCGCGUGCa-UGUGGaaGCGCa-----UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 99463 0.73 0.696268
Target:  5'- aCGCGCGCGUGCGCgagggcguCUUCGUGgcCgugCGg -3'
miRNA:   3'- -GCGCGUGCAUGUG--------GAAGCGCauGa--GC- -5'
25579 5' -53.6 NC_005337.1 + 115457 0.72 0.706437
Target:  5'- gGCGUACG-ACGCgCUg-GCGUACUCGc -3'
miRNA:   3'- gCGCGUGCaUGUG-GAagCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 95038 0.72 0.716541
Target:  5'- gCGgGCAgGaACGCCUgCGCGUugUCGc -3'
miRNA:   3'- -GCgCGUgCaUGUGGAaGCGCAugAGC- -5'
25579 5' -53.6 NC_005337.1 + 46750 0.74 0.644784
Target:  5'- gGCuCAUGUACAUCUUCGCuGcGCUCGg -3'
miRNA:   3'- gCGcGUGCAUGUGGAAGCG-CaUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 18979 0.74 0.634422
Target:  5'- gGCGCGUGUACuCCUcCGCGaGCUCGg -3'
miRNA:   3'- gCGCGUGCAUGuGGAaGCGCaUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 132962 0.74 0.624057
Target:  5'- uCGUGCACGUGCACCUgguggUCGUG-AC-CGu -3'
miRNA:   3'- -GCGCGUGCAUGUGGA-----AGCGCaUGaGC- -5'
25579 5' -53.6 NC_005337.1 + 39938 0.79 0.375159
Target:  5'- aCGUGCGCGgcggGCGCCUcgCGCGggcGCUCGa -3'
miRNA:   3'- -GCGCGUGCa---UGUGGAa-GCGCa--UGAGC- -5'
25579 5' -53.6 NC_005337.1 + 42743 0.77 0.470445
Target:  5'- cCGCGCcgaGCGUgcggugcgggucccGCGCgUUCGUGUGCUCGg -3'
miRNA:   3'- -GCGCG---UGCA--------------UGUGgAAGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 103950 0.76 0.502252
Target:  5'- cCGCgaGCGCGUGCGcuCCUcCGCGUACUCc -3'
miRNA:   3'- -GCG--CGUGCAUGU--GGAaGCGCAUGAGc -5'
25579 5' -53.6 NC_005337.1 + 58740 0.76 0.512077
Target:  5'- gGCGCGgGUGCACCggagcagcagcUUCGCGUACcagUCGu -3'
miRNA:   3'- gCGCGUgCAUGUGG-----------AAGCGCAUG---AGC- -5'
25579 5' -53.6 NC_005337.1 + 75763 0.76 0.52198
Target:  5'- uGCGCAgGcACACCUcCGUGUACUUGc -3'
miRNA:   3'- gCGCGUgCaUGUGGAaGCGCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 132104 0.75 0.552109
Target:  5'- cCGUGCGCGUcgGCGCCgugCGCGgcagGCUCc -3'
miRNA:   3'- -GCGCGUGCA--UGUGGaa-GCGCa---UGAGc -5'
25579 5' -53.6 NC_005337.1 + 12697 0.75 0.582741
Target:  5'- gGCGCGCGUACAUg--CG-GUGCUCGg -3'
miRNA:   3'- gCGCGUGCAUGUGgaaGCgCAUGAGC- -5'
25579 5' -53.6 NC_005337.1 + 95926 0.75 0.593033
Target:  5'- uCGUGUGCGUgauGCGCag-CGCGUACUCGc -3'
miRNA:   3'- -GCGCGUGCA---UGUGgaaGCGCAUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.