miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 3' -56 NC_005337.1 + 134251 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134251 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134137 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134137 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134076 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134076 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134015 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134015 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133954 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133954 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133893 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133893 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 128104 0.67 0.858072
Target:  5'- aGUGCuaaGCGAacugGUGGUGcGCGgcugCCGCGu -3'
miRNA:   3'- gCACG---UGCUg---CACCACaCGUa---GGCGU- -5'
25661 3' -56 NC_005337.1 + 123376 0.67 0.858072
Target:  5'- gCGUGCGCGACGcGGcgaucGUGCuUCCa-- -3'
miRNA:   3'- -GCACGUGCUGCaCCa----CACGuAGGcgu -5'
25661 3' -56 NC_005337.1 + 122668 0.68 0.799105
Target:  5'- --cGCugGACGaggaccUGGUGcUGCA-CCGCAu -3'
miRNA:   3'- gcaCGugCUGC------ACCAC-ACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 117538 0.68 0.780758
Target:  5'- gGUGCAcguCGACGUcgGGUGUGCcgUCGa- -3'
miRNA:   3'- gCACGU---GCUGCA--CCACACGuaGGCgu -5'
25661 3' -56 NC_005337.1 + 117299 0.7 0.702716
Target:  5'- gCGUGCugGAgGUGGac-GCcUCCGCGc -3'
miRNA:   3'- -GCACGugCUgCACCacaCGuAGGCGU- -5'
25661 3' -56 NC_005337.1 + 115360 0.66 0.900694
Target:  5'- gCGUGCccGCgGACGUGGUGgggaGCA--CGCAc -3'
miRNA:   3'- -GCACG--UG-CUGCACCACa---CGUagGCGU- -5'
25661 3' -56 NC_005337.1 + 113163 0.68 0.799105
Target:  5'- gGUGCGCuGCGUGGcGgccgGCGUcCCGUAc -3'
miRNA:   3'- gCACGUGcUGCACCaCa---CGUA-GGCGU- -5'
25661 3' -56 NC_005337.1 + 110891 0.66 0.887386
Target:  5'- -uUGUA-GAUGUaGGUGUgucGCAUCCGCGg -3'
miRNA:   3'- gcACGUgCUGCA-CCACA---CGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.