miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 47855 1.12 0.001128
Target:  5'- gACCGAGGACGCCAUCCACAUCGCGCCg -3'
miRNA:   3'- -UGGCUCCUGCGGUAGGUGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 12739 0.72 0.455964
Target:  5'- uGCCgGAGGAUGuCCGucUCCACGUcCGCGUa -3'
miRNA:   3'- -UGG-CUCCUGC-GGU--AGGUGUA-GCGCGg -5'
25661 5' -58.1 NC_005337.1 + 102548 0.72 0.46511
Target:  5'- uGCgCGAGGAgGUCGUcaCCGCGUaCGCGCUc -3'
miRNA:   3'- -UG-GCUCCUgCGGUA--GGUGUA-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 115962 0.66 0.834164
Target:  5'- gGCCauGGACGCgCuguUCCgcugccuguucgugcACAUCGCGCUg -3'
miRNA:   3'- -UGGcuCCUGCG-Gu--AGG---------------UGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 77443 0.77 0.245791
Target:  5'- aGCCGugccGGAUGCgGUcCCAUAUCGCGCUg -3'
miRNA:   3'- -UGGCu---CCUGCGgUA-GGUGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 115412 0.75 0.317236
Target:  5'- uCCGAGGACGCCGUCuCGC--CG-GCCg -3'
miRNA:   3'- uGGCUCCUGCGGUAG-GUGuaGCgCGG- -5'
25661 5' -58.1 NC_005337.1 + 118785 0.74 0.354539
Target:  5'- cGCCGgcGGcGGCGCCGUcgugCCGCG-CGCGCCg -3'
miRNA:   3'- -UGGC--UC-CUGCGGUA----GGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 131551 0.74 0.362362
Target:  5'- uACCGGcGGACGUCGUCgCGC-UCGUGCUc -3'
miRNA:   3'- -UGGCU-CCUGCGGUAG-GUGuAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 82640 0.74 0.386539
Target:  5'- gACCGcGGAgCGCCGaCCGCAgcUCGuCGCCg -3'
miRNA:   3'- -UGGCuCCU-GCGGUaGGUGU--AGC-GCGG- -5'
25661 5' -58.1 NC_005337.1 + 37431 0.72 0.446916
Target:  5'- aGCCGGGGgaACGCCAcgCCGCGgcUGCGCa -3'
miRNA:   3'- -UGGCUCC--UGCGGUa-GGUGUa-GCGCGg -5'
25661 5' -58.1 NC_005337.1 + 814 0.73 0.437968
Target:  5'- uCCGcGGA-GCCGUCCGCG-CGCGCg -3'
miRNA:   3'- uGGCuCCUgCGGUAGGUGUaGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 40129 0.74 0.378363
Target:  5'- cACCGuGGugGUCAUCUcCAUCGUGUg -3'
miRNA:   3'- -UGGCuCCugCGGUAGGuGUAGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 97748 0.85 0.078676
Target:  5'- cGCCGGGGACGCCcgCgGCGuucaggaucgUCGCGCCg -3'
miRNA:   3'- -UGGCUCCUGCGGuaGgUGU----------AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 12695 0.72 0.446916
Target:  5'- uACCGuucccGGugG-CGUCCGCGcgCGCGCCg -3'
miRNA:   3'- -UGGCu----CCugCgGUAGGUGUa-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 43070 0.79 0.179115
Target:  5'- cACCGGcGGcGCGcCCGUCCGCAUCGCGgCg -3'
miRNA:   3'- -UGGCU-CC-UGC-GGUAGGUGUAGCGCgG- -5'
25661 5' -58.1 NC_005337.1 + 78551 0.74 0.378363
Target:  5'- uACaCGGGcGCGCCGUgCGCGUCGUGCUu -3'
miRNA:   3'- -UG-GCUCcUGCGGUAgGUGUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 38082 0.72 0.446916
Target:  5'- uCCGuGGGCGCCA-CCACGcucauguacaUCGUGCUc -3'
miRNA:   3'- uGGCuCCUGCGGUaGGUGU----------AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 38661 0.72 0.46511
Target:  5'- cGCCcacGGACGCCG-CCAUggCGCGCUg -3'
miRNA:   3'- -UGGcu-CCUGCGGUaGGUGuaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 124300 0.77 0.234331
Target:  5'- gGCCGAGGACGCgG-CCucCGUCGCGgCg -3'
miRNA:   3'- -UGGCUCCUGCGgUaGGu-GUAGCGCgG- -5'
25661 5' -58.1 NC_005337.1 + 50228 0.75 0.331794
Target:  5'- cCCGAGGGCGUCGUgCGCGccUC-CGCCg -3'
miRNA:   3'- uGGCUCCUGCGGUAgGUGU--AGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.