miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 131402 0.7 0.82338
Target:  5'- cCGugAUCGUGuucccGCuGGCGCGCggCUCCGc -3'
miRNA:   3'- -GUugUAGCACu----UG-UCGCGCGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 131084 0.66 0.954383
Target:  5'- gCGAguUCGUGGuCuGCGCGCUggCCAu -3'
miRNA:   3'- -GUUguAGCACUuGuCGCGCGAgaGGU- -5'
25667 3' -52.7 NC_005337.1 + 130382 0.66 0.954383
Target:  5'- --cCGUCGUGGACcuGCGCGUcCUCa- -3'
miRNA:   3'- guuGUAGCACUUGu-CGCGCGaGAGgu -5'
25667 3' -52.7 NC_005337.1 + 127465 0.67 0.930935
Target:  5'- -cGCAcgcUCGUGGACAGCG-GCUgcgaUCCGg -3'
miRNA:   3'- guUGU---AGCACUUGUCGCgCGAg---AGGU- -5'
25667 3' -52.7 NC_005337.1 + 123081 0.69 0.880184
Target:  5'- gCGAUAUCGUGAACca---GCUCUCCGc -3'
miRNA:   3'- -GUUGUAGCACUUGucgcgCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 122401 0.68 0.907576
Target:  5'- aGugGUaCGUGGGCAGCGCcucgcucacggGCggCUCCAu -3'
miRNA:   3'- gUugUA-GCACUUGUCGCG-----------CGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 122393 0.66 0.962028
Target:  5'- gCGAgGUCGUGcugcgcGGCGGCGCGCggcgCCu -3'
miRNA:   3'- -GUUgUAGCAC------UUGUCGCGCGaga-GGu -5'
25667 3' -52.7 NC_005337.1 + 120230 0.67 0.941074
Target:  5'- aCAGCAUCGccGAGCAGUGCGUguaCgaacCCGc -3'
miRNA:   3'- -GUUGUAGCa-CUUGUCGCGCGa--Ga---GGU- -5'
25667 3' -52.7 NC_005337.1 + 117410 0.67 0.941074
Target:  5'- aCGACAUCGUGGACuucGagaGCGUg-UCCAa -3'
miRNA:   3'- -GUUGUAGCACUUGu--Cg--CGCGagAGGU- -5'
25667 3' -52.7 NC_005337.1 + 117357 0.73 0.664684
Target:  5'- uCGGCcgCGUGGAC-GUGCGCacgCUCCAg -3'
miRNA:   3'- -GUUGuaGCACUUGuCGCGCGa--GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 112598 0.67 0.941074
Target:  5'- aAACGUCGUGAccagguaguGCAGCGCGagcacgugCcCCAg -3'
miRNA:   3'- gUUGUAGCACU---------UGUCGCGCga------GaGGU- -5'
25667 3' -52.7 NC_005337.1 + 110255 0.69 0.894373
Target:  5'- gAGCcgCGUGAGCauguguaugAGCGCGgUCUCg- -3'
miRNA:   3'- gUUGuaGCACUUG---------UCGCGCgAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 110080 0.79 0.36859
Target:  5'- -cGCGUCuGUGAGgCAGUGCGUUCUCCGu -3'
miRNA:   3'- guUGUAG-CACUU-GUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 109887 0.66 0.959835
Target:  5'- gAGCAUgGUGAucuggucgcccggacACAGCGCGgagaaCUcCUCCAg -3'
miRNA:   3'- gUUGUAgCACU---------------UGUCGCGC-----GA-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 108735 0.66 0.954383
Target:  5'- gGACAUCG-GAuucucGCGGCGCGUgggCCGc -3'
miRNA:   3'- gUUGUAGCaCU-----UGUCGCGCGagaGGU- -5'
25667 3' -52.7 NC_005337.1 + 108441 0.75 0.559046
Target:  5'- gGGCuucCG-GAACAGCGCGCUCUUCu -3'
miRNA:   3'- gUUGua-GCaCUUGUCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 106633 0.66 0.954383
Target:  5'- aCGAgAUCGU----GGCGCGCUCcgCCAa -3'
miRNA:   3'- -GUUgUAGCAcuugUCGCGCGAGa-GGU- -5'
25667 3' -52.7 NC_005337.1 + 104971 0.81 0.284488
Target:  5'- cCGGCA-CGUGAGCGGCGUgaugacccuGCUCUCCAa -3'
miRNA:   3'- -GUUGUaGCACUUGUCGCG---------CGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 103943 0.66 0.958326
Target:  5'- uCAACAacCGcGAGCGcGUGCGCUcCUCCGc -3'
miRNA:   3'- -GUUGUa-GCaCUUGU-CGCGCGA-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 103746 0.66 0.968733
Target:  5'- --cCAUCGUGcuCAGCaagGCGCUggagacCUCCAa -3'
miRNA:   3'- guuGUAGCACuuGUCG---CGCGA------GAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.