Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25667 | 3' | -52.7 | NC_005337.1 | + | 44382 | 1.09 | 0.005089 |
Target: 5'- cCAACAUCGUGAACAGCGCGCUCUCCAu -3' miRNA: 3'- -GUUGUAGCACUUGUCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 11358 | 0.69 | 0.8874 |
Target: 5'- uCAGCAUCGcGcccuCgAGCGCGCUCgCCAu -3' miRNA: 3'- -GUUGUAGCaCuu--G-UCGCGCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 86261 | 0.68 | 0.907576 |
Target: 5'- ----uUCGUGcuccGCAGCGCGCggaUCCAg -3' miRNA: 3'- guuguAGCACu---UGUCGCGCGag-AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 88248 | 0.66 | 0.971749 |
Target: 5'- aGACGUCGUGcgugcCGGCGCGCcggCgggcgCCGc -3' miRNA: 3'- gUUGUAGCACuu---GUCGCGCGa--Ga----GGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 108441 | 0.75 | 0.559046 |
Target: 5'- gGGCuucCG-GAACAGCGCGCUCUUCu -3' miRNA: 3'- gUUGua-GCaCUUGUCGCGCGAGAGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 5941 | 0.74 | 0.643497 |
Target: 5'- cCGGCGUUGgaccGAGCAGuCGCGCUCgcgCCGc -3' miRNA: 3'- -GUUGUAGCa---CUUGUC-GCGCGAGa--GGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 88328 | 0.73 | 0.685758 |
Target: 5'- -----cCGUGcgcucCGGCGCGCUCUCCAg -3' miRNA: 3'- guuguaGCACuu---GUCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 55112 | 0.72 | 0.716986 |
Target: 5'- cCGAgAUCGUGGAggugcccucgucCGGCGUGgUCUCCAu -3' miRNA: 3'- -GUUgUAGCACUU------------GUCGCGCgAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 103126 | 0.71 | 0.785688 |
Target: 5'- gCGGCAUCGUGc---GCGCGCUCuacagcgUCCAg -3' miRNA: 3'- -GUUGUAGCACuuguCGCGCGAG-------AGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 123081 | 0.69 | 0.880184 |
Target: 5'- gCGAUAUCGUGAACca---GCUCUCCGc -3' miRNA: 3'- -GUUGUAGCACUUGucgcgCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 100721 | 0.69 | 0.872731 |
Target: 5'- -cACGUaCGUGAaguacACGGCucugguguccGCGCUCUCCGc -3' miRNA: 3'- guUGUA-GCACU-----UGUCG----------CGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 4496 | 0.72 | 0.747511 |
Target: 5'- cCAGCA-CGUGcAGCGGCGUGUUC-CCGa -3' miRNA: 3'- -GUUGUaGCAC-UUGUCGCGCGAGaGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 104971 | 0.81 | 0.284488 |
Target: 5'- cCGGCA-CGUGAGCGGCGUgaugacccuGCUCUCCAa -3' miRNA: 3'- -GUUGUaGCACUUGUCGCG---------CGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 63415 | 0.69 | 0.880184 |
Target: 5'- uGGCGcgcUCGU--ACAGCGCGCgguUCUCCGc -3' miRNA: 3'- gUUGU---AGCAcuUGUCGCGCG---AGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 110080 | 0.79 | 0.36859 |
Target: 5'- -cGCGUCuGUGAGgCAGUGCGUUCUCCGu -3' miRNA: 3'- guUGUAG-CACUU-GUCGCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 47970 | 0.72 | 0.737431 |
Target: 5'- aCGGCuucuUCGUGGACGGgGCGCgCUUCGc -3' miRNA: 3'- -GUUGu---AGCACUUGUCgCGCGaGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 30737 | 0.69 | 0.880184 |
Target: 5'- ---aGUCGU--ACAGCGCGCgCUCCu -3' miRNA: 3'- guugUAGCAcuUGUCGCGCGaGAGGu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 31879 | 0.69 | 0.894373 |
Target: 5'- -----cCGUGGGCAcggucuuCGCGCUCUCCAc -3' miRNA: 3'- guuguaGCACUUGUc------GCGCGAGAGGU- -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 68670 | 0.77 | 0.458595 |
Target: 5'- gAGCG-CGUGcAGCAGCGCGCUCUUg- -3' miRNA: 3'- gUUGUaGCAC-UUGUCGCGCGAGAGgu -5' |
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25667 | 3' | -52.7 | NC_005337.1 | + | 49273 | 0.74 | 0.6541 |
Target: 5'- gGACAUCGUGcAgGGCGUGaUCUCCGc -3' miRNA: 3'- gUUGUAGCACuUgUCGCGCgAGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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