miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 5' -57.3 NC_005337.1 + 131261 0.65 0.850697
Target:  5'- aCUCGGAGuccuucguGCGGCUCGucucGuacuucuaccccucGGCCGUGc -3'
miRNA:   3'- -GAGCCUCuu------CGUCGAGC----U--------------CCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 129614 0.67 0.775238
Target:  5'- -gUGGAGcucguccGGCGGCUCGuGGCCGccgGGu -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCuCCGGCa--CU- -5'
25667 5' -57.3 NC_005337.1 + 129065 0.66 0.836978
Target:  5'- gUCGGAGAGGUGGUcgCGcugcuGGCCGa-- -3'
miRNA:   3'- gAGCCUCUUCGUCGa-GCu----CCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 127447 0.73 0.413102
Target:  5'- uCUCGGAGGAugagguccgccGCcuGCUCGGGGCCGg-- -3'
miRNA:   3'- -GAGCCUCUU-----------CGu-CGAGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 122295 0.69 0.687108
Target:  5'- -gCGGAGGAGCuccgCGAGGCgggCGUGAa -3'
miRNA:   3'- gaGCCUCUUCGucgaGCUCCG---GCACU- -5'
25667 5' -57.3 NC_005337.1 + 121257 0.67 0.756314
Target:  5'- cCUCGGuGAAGUAGUcgUCGcAGGCCu--- -3'
miRNA:   3'- -GAGCCuCUUCGUCG--AGC-UCCGGcacu -5'
25667 5' -57.3 NC_005337.1 + 119678 0.67 0.760137
Target:  5'- aCUCGGGGAacauggccGGCgccaucguggaccggAGCcgCGAGGCCG-GAu -3'
miRNA:   3'- -GAGCCUCU--------UCG---------------UCGa-GCUCCGGCaCU- -5'
25667 5' -57.3 NC_005337.1 + 114657 0.66 0.820151
Target:  5'- -cCGGuGAAcGCGGgcCUCGAGGCCGc-- -3'
miRNA:   3'- gaGCCuCUU-CGUC--GAGCUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 112391 0.69 0.636117
Target:  5'- -cUGGAGGAGC-GCcgCGcAGGCCGUGc -3'
miRNA:   3'- gaGCCUCUUCGuCGa-GC-UCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 110363 0.66 0.811478
Target:  5'- gUCGGAGGgcGGCAGC-CGucccacGGgCGUGGg -3'
miRNA:   3'- gAGCCUCU--UCGUCGaGCu-----CCgGCACU- -5'
25667 5' -57.3 NC_005337.1 + 108794 0.67 0.801748
Target:  5'- gCUCuucGAGAacuucaaGGUggAGUUCGAGGCCGUGu -3'
miRNA:   3'- -GAGc--CUCU-------UCG--UCGAGCUCCGGCACu -5'
25667 5' -57.3 NC_005337.1 + 105197 0.67 0.79365
Target:  5'- -gCGGGGuccGCGGcCUgGGGGCCGcUGAg -3'
miRNA:   3'- gaGCCUCuu-CGUC-GAgCUCCGGC-ACU- -5'
25667 5' -57.3 NC_005337.1 + 103322 0.68 0.707245
Target:  5'- -cCGcGAGGAGCGGCUgGAGGacauccugcgCGUGAu -3'
miRNA:   3'- gaGC-CUCUUCGUCGAgCUCCg---------GCACU- -5'
25667 5' -57.3 NC_005337.1 + 101508 0.7 0.61564
Target:  5'- -gCGcGAGcgcuccgcGCGGCUgGAGGCCGUGGa -3'
miRNA:   3'- gaGC-CUCuu------CGUCGAgCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 98982 0.68 0.707245
Target:  5'- -gCGcGAuGAAGU-GCaUCGAGGCCGUGGa -3'
miRNA:   3'- gaGC-CU-CUUCGuCG-AGCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 96435 0.69 0.676966
Target:  5'- -cUGGAGAaccucaagcgcaAGUucAGCUuccgCGAGGCCGUGAc -3'
miRNA:   3'- gaGCCUCU------------UCG--UCGA----GCUCCGGCACU- -5'
25667 5' -57.3 NC_005337.1 + 94458 0.67 0.784512
Target:  5'- -gCGGcGGAGCAGCUCcGGGUCGc-- -3'
miRNA:   3'- gaGCCuCUUCGUCGAGcUCCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 89977 0.69 0.665768
Target:  5'- gCUCGGGGGAGCGGCgccguaaaugcccUCGucGCCGc-- -3'
miRNA:   3'- -GAGCCUCUUCGUCG-------------AGCucCGGCacu -5'
25667 5' -57.3 NC_005337.1 + 88289 0.66 0.836978
Target:  5'- gUCGGuGGAGGCggacaucaAGCUCGGGGacgucagCGUGGa -3'
miRNA:   3'- gAGCC-UCUUCG--------UCGAGCUCCg------GCACU- -5'
25667 5' -57.3 NC_005337.1 + 83259 0.72 0.476678
Target:  5'- -cCGGAGccugacuGGCGGCUCGAgGGCCGg-- -3'
miRNA:   3'- gaGCCUCu------UCGUCGAGCU-CCGGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.