miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 3' -55.4 NC_005337.1 + 58658 0.66 0.921774
Target:  5'- gCGggaCACGCGCGccaAGCUCgUGGAcGCc -3'
miRNA:   3'- gGCaa-GUGCGCGC---UCGAGgACUU-CGa -5'
25675 3' -55.4 NC_005337.1 + 87940 0.66 0.920085
Target:  5'- uUGUUCuuGUGCGAGUacacgaugauguccUCCUGGAGg- -3'
miRNA:   3'- gGCAAGugCGCGCUCG--------------AGGACUUCga -5'
25675 3' -55.4 NC_005337.1 + 128691 0.66 0.91606
Target:  5'- gCCGggCACGCGCGcuGGCgacgcggCUGgcGCg -3'
miRNA:   3'- -GGCaaGUGCGCGC--UCGag-----GACuuCGa -5'
25675 3' -55.4 NC_005337.1 + 97853 0.66 0.91606
Target:  5'- gCCGggUgagGCGCGCGAGgaCUCCguggugGAGGUg -3'
miRNA:   3'- -GGCaaG---UGCGCGCUC--GAGGa-----CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 59655 0.66 0.91606
Target:  5'- gCCGgggaacaUCACGUcgucGCG-GCUCCggGAGGCg -3'
miRNA:   3'- -GGCa------AGUGCG----CGCuCGAGGa-CUUCGa -5'
25675 3' -55.4 NC_005337.1 + 116111 0.66 0.91606
Target:  5'- -aGUUCGuCGaGCagGAGCUCgUGGAGCUg -3'
miRNA:   3'- ggCAAGU-GCgCG--CUCGAGgACUUCGA- -5'
25675 3' -55.4 NC_005337.1 + 38611 0.66 0.91606
Target:  5'- gCGUggGCGUGCuggggaacccgGAGCcCCUGGAGCc -3'
miRNA:   3'- gGCAagUGCGCG-----------CUCGaGGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 91011 0.66 0.91606
Target:  5'- gCCGgaugCugGCggcgcucgagaGCGAGUUcgaCCUGAAGCg -3'
miRNA:   3'- -GGCaa--GugCG-----------CGCUCGA---GGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 66329 0.66 0.910105
Target:  5'- gCGggCugGCGacaCGuGCUCgUGGAGCg -3'
miRNA:   3'- gGCaaGugCGC---GCuCGAGgACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 69549 0.66 0.910105
Target:  5'- aCCG---GCGCGCGGGCUgCUcGgcGCg -3'
miRNA:   3'- -GGCaagUGCGCGCUCGAgGA-CuuCGa -5'
25675 3' -55.4 NC_005337.1 + 72600 0.66 0.910105
Target:  5'- uCCGggUCGCGCGCGGGCguggUGguGCc -3'
miRNA:   3'- -GGCa-AGUGCGCGCUCGagg-ACuuCGa -5'
25675 3' -55.4 NC_005337.1 + 109463 0.66 0.910105
Target:  5'- aCCGUgugcgugCGCGCGUGGGCgcgcuUCCgGAucucGGCg -3'
miRNA:   3'- -GGCAa------GUGCGCGCUCG-----AGGaCU----UCGa -5'
25675 3' -55.4 NC_005337.1 + 10310 0.66 0.903909
Target:  5'- gCCGUUCGCgucuaugugcaGCGCGAccgGCUCgC-GggGCg -3'
miRNA:   3'- -GGCAAGUG-----------CGCGCU---CGAG-GaCuuCGa -5'
25675 3' -55.4 NC_005337.1 + 69713 0.66 0.903909
Target:  5'- aCCGcUUCGC-CaGCG-GCUCCUGcGGCa -3'
miRNA:   3'- -GGC-AAGUGcG-CGCuCGAGGACuUCGa -5'
25675 3' -55.4 NC_005337.1 + 106590 0.66 0.897476
Target:  5'- gCGUggACGCGCGA---CCUGggGCc -3'
miRNA:   3'- gGCAagUGCGCGCUcgaGGACuuCGa -5'
25675 3' -55.4 NC_005337.1 + 30383 0.66 0.897476
Target:  5'- aCGUccaugUCGCGCGCGgccAGCagCUGgcGCUu -3'
miRNA:   3'- gGCA-----AGUGCGCGC---UCGagGACuuCGA- -5'
25675 3' -55.4 NC_005337.1 + 82273 0.66 0.890808
Target:  5'- gCGUUCGagGuCGUGAGCaucuUCCUGGAGUc -3'
miRNA:   3'- gGCAAGUg-C-GCGCUCG----AGGACUUCGa -5'
25675 3' -55.4 NC_005337.1 + 9664 0.66 0.890808
Target:  5'- ----cCGCGCGUGAGCUCgguaacgaaaUGggGCUu -3'
miRNA:   3'- ggcaaGUGCGCGCUCGAGg---------ACuuCGA- -5'
25675 3' -55.4 NC_005337.1 + 46462 0.66 0.890808
Target:  5'- gCGcggCGCGCcgGCGAGCUCCcgGGcAGCa -3'
miRNA:   3'- gGCaa-GUGCG--CGCUCGAGGa-CU-UCGa -5'
25675 3' -55.4 NC_005337.1 + 35563 0.66 0.890808
Target:  5'- -aGggCGcCGCGCGAGCggaugCCUagcGAGGCg -3'
miRNA:   3'- ggCaaGU-GCGCGCUCGa----GGA---CUUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.