miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 5' -59.3 NC_005337.1 + 87317 0.66 0.737081
Target:  5'- uCCAGCUUCaucuugGAGGUG-AUGUGCGUGc- -3'
miRNA:   3'- -GGUCGAAG------CUCCGCgUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 27114 0.66 0.756071
Target:  5'- uCCAGCagcCGcuuGGC-CACGCGCagcaGCGUGa -3'
miRNA:   3'- -GGUCGaa-GCu--CCGcGUGCGCG----CGCAC- -5'
25675 5' -59.3 NC_005337.1 + 3383 0.66 0.756071
Target:  5'- gCGGCcaUGAGGUGCA-GCG-GCGUGu -3'
miRNA:   3'- gGUCGaaGCUCCGCGUgCGCgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 88118 0.66 0.746625
Target:  5'- aCAGCga-GAGGUagaGCACGCGCuCGa- -3'
miRNA:   3'- gGUCGaagCUCCG---CGUGCGCGcGCac -5'
25675 5' -59.3 NC_005337.1 + 68529 0.66 0.72745
Target:  5'- cUCGGCUcUGAGcGUGC-CGCGCuaGUGa -3'
miRNA:   3'- -GGUCGAaGCUC-CGCGuGCGCGcgCAC- -5'
25675 5' -59.3 NC_005337.1 + 132177 0.66 0.72745
Target:  5'- --cGCgacgGAGGCGCugGCGCugGCGUc -3'
miRNA:   3'- gguCGaag-CUCCGCGugCGCG--CGCAc -5'
25675 5' -59.3 NC_005337.1 + 61167 0.66 0.746625
Target:  5'- aCGGUgUCGAaguccuccuuGGUGCACaCGCGCGUc -3'
miRNA:   3'- gGUCGaAGCU----------CCGCGUGcGCGCGCAc -5'
25675 5' -59.3 NC_005337.1 + 80198 0.66 0.746625
Target:  5'- uCCAGCUcgcgcgucucgUUGAuGaGCGCGCGCaCGCGg- -3'
miRNA:   3'- -GGUCGA-----------AGCU-C-CGCGUGCGcGCGCac -5'
25675 5' -59.3 NC_005337.1 + 854 0.66 0.737081
Target:  5'- -aGGCggCG-GGCaGCGCGgGCGCGg- -3'
miRNA:   3'- ggUCGaaGCuCCG-CGUGCgCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 19686 0.66 0.72745
Target:  5'- uCCAGCggccgCGuGGCGUACaGCGCcgGCGc- -3'
miRNA:   3'- -GGUCGaa---GCuCCGCGUG-CGCG--CGCac -5'
25675 5' -59.3 NC_005337.1 + 49422 0.66 0.724545
Target:  5'- uCguGCUUCGGauGGUGCuccgaaacgcggccGCGUGCGCGa- -3'
miRNA:   3'- -GguCGAAGCU--CCGCG--------------UGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 37686 0.66 0.756071
Target:  5'- uUCAcGCccgUGuGGaCGCcCGCGCGCGUGa -3'
miRNA:   3'- -GGU-CGaa-GCuCC-GCGuGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 38474 0.66 0.72745
Target:  5'- gCGGUgcgCGccGGGCGCGCGCGuCGCc-- -3'
miRNA:   3'- gGUCGaa-GC--UCCGCGUGCGC-GCGcac -5'
25675 5' -59.3 NC_005337.1 + 124907 0.66 0.746625
Target:  5'- uCUGGC-UCGAacGCGCA-GCGCGCGUc -3'
miRNA:   3'- -GGUCGaAGCUc-CGCGUgCGCGCGCAc -5'
25675 5' -59.3 NC_005337.1 + 1107 0.66 0.764483
Target:  5'- gCAGCgccgccgcCGGGaGCagccgcaGCACGCGCGCGa- -3'
miRNA:   3'- gGUCGaa------GCUC-CG-------CGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 96286 0.66 0.72745
Target:  5'- cCCGGCggcgUUGGGGUGCAUGaucugcauggcCGCGCa-- -3'
miRNA:   3'- -GGUCGa---AGCUCCGCGUGC-----------GCGCGcac -5'
25675 5' -59.3 NC_005337.1 + 133568 0.66 0.77464
Target:  5'- gCGGCcgCG-GGCGUGCGCGCGa--- -3'
miRNA:   3'- gGUCGaaGCuCCGCGUGCGCGCgcac -5'
25675 5' -59.3 NC_005337.1 + 2075 0.66 0.726482
Target:  5'- gCAGCagC-AGGCGCACggugucgGCGCGCGc- -3'
miRNA:   3'- gGUCGaaGcUCCGCGUG-------CGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 109369 0.66 0.756071
Target:  5'- gCAGUacacgGAGGCggGCACGCGCGgGUc -3'
miRNA:   3'- gGUCGaag--CUCCG--CGUGCGCGCgCAc -5'
25675 5' -59.3 NC_005337.1 + 71276 0.66 0.737081
Target:  5'- cUCAuGCgccgCGuGGCGCugGUGCGCu-- -3'
miRNA:   3'- -GGU-CGaa--GCuCCGCGugCGCGCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.