miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 5' -59.3 NC_005337.1 + 42520 1.1 0.001134
Target:  5'- uCCAGCUUCGAGGCGCACGCGCGCGUGg -3'
miRNA:   3'- -GGUCGAAGCUCCGCGUGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 126422 0.89 0.034772
Target:  5'- cCCGGCgcgCGAcGGCGCGCGUGCGCGUGu -3'
miRNA:   3'- -GGUCGaa-GCU-CCGCGUGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 66088 0.8 0.143218
Target:  5'- gCGGCggCgGAGGCGCugugcggcgucuGCGCGCGCGUGg -3'
miRNA:   3'- gGUCGaaG-CUCCGCG------------UGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 125942 0.79 0.150618
Target:  5'- cCCcGCUgcUCGAGGCGgGCGUGgGCGUGa -3'
miRNA:   3'- -GGuCGA--AGCUCCGCgUGCGCgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 101212 0.79 0.16237
Target:  5'- gCCuGCUUCgcggaggucgcgGAGGCGUcCGCGCGCGUGc -3'
miRNA:   3'- -GGuCGAAG------------CUCCGCGuGCGCGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 99694 0.78 0.179321
Target:  5'- aCAGCUUCGAcGCGC-UGCGCGCGg- -3'
miRNA:   3'- gGUCGAAGCUcCGCGuGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 121554 0.76 0.228684
Target:  5'- uCCGGCaccuccUCGAGcGCgGCGCGCGCGCGg- -3'
miRNA:   3'- -GGUCGa-----AGCUC-CG-CGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 110499 0.76 0.25145
Target:  5'- gCCAGC-UCGAcguGGCGCuCGCGCGUGg- -3'
miRNA:   3'- -GGUCGaAGCU---CCGCGuGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 29704 0.76 0.257426
Target:  5'- aCCGGaCggacgcgCGAGGCGCgcacGCGCGCGCGg- -3'
miRNA:   3'- -GGUC-Gaa-----GCUCCGCG----UGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 84568 0.75 0.269726
Target:  5'- aCCGGCgcgccgagccCGGGGCGCugGUGUGgGUGa -3'
miRNA:   3'- -GGUCGaa--------GCUCCGCGugCGCGCgCAC- -5'
25675 5' -59.3 NC_005337.1 + 25106 0.75 0.276052
Target:  5'- cCCGcGCggCGcGGCGCGCGCGgaCGCGUGa -3'
miRNA:   3'- -GGU-CGaaGCuCCGCGUGCGC--GCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 65039 0.75 0.276052
Target:  5'- aCCGGCacgUCcAGGCGCGCGCGCaCGUu -3'
miRNA:   3'- -GGUCGa--AGcUCCGCGUGCGCGcGCAc -5'
25675 5' -59.3 NC_005337.1 + 122099 0.74 0.30946
Target:  5'- aCCAGC-UCGucGCGCACG-GCGCGg- -3'
miRNA:   3'- -GGUCGaAGCucCGCGUGCgCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 67867 0.74 0.322219
Target:  5'- gCAGCgcggugagguugUCGAGGCGCAgCGCGUGCu-- -3'
miRNA:   3'- gGUCGa-----------AGCUCCGCGU-GCGCGCGcac -5'
25675 5' -59.3 NC_005337.1 + 64011 0.74 0.330942
Target:  5'- gCGGCUUCc-GGCacaGCGCGCaGCGCGUGg -3'
miRNA:   3'- gGUCGAAGcuCCG---CGUGCG-CGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 91869 0.74 0.338342
Target:  5'- gCCGGCgcacagCGAGGC-CGCGCGcCGCGg- -3'
miRNA:   3'- -GGUCGaa----GCUCCGcGUGCGC-GCGCac -5'
25675 5' -59.3 NC_005337.1 + 37307 0.73 0.345862
Target:  5'- cCCGGCcgCGAGGaGCugguCGCGCGCGg- -3'
miRNA:   3'- -GGUCGaaGCUCCgCGu---GCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 50752 0.73 0.345862
Target:  5'- --uGCUcgugaUCGcGGGCGCACGCGUGCGg- -3'
miRNA:   3'- gguCGA-----AGC-UCCGCGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 76397 0.73 0.353501
Target:  5'- aCCGuGCgcgCGGGGCGCugGCGCcCGUc -3'
miRNA:   3'- -GGU-CGaa-GCUCCGCGugCGCGcGCAc -5'
25675 5' -59.3 NC_005337.1 + 86156 0.73 0.35659
Target:  5'- uCCAGCguggCGGGggagggguagcugcaGCGCAUGCGCGCGc- -3'
miRNA:   3'- -GGUCGaa--GCUC---------------CGCGUGCGCGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.