Results 1 - 20 of 240 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25675 | 5' | -59.3 | NC_005337.1 | + | 131648 | 0.71 | 0.463139 |
Target: 5'- uCC-GCUUCGAGGaGCcCGUGCGCGc- -3' miRNA: 3'- -GGuCGAAGCUCCgCGuGCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 38299 | 0.73 | 0.369134 |
Target: 5'- aCCGGUggaGGGGCGCGCGCGUcgaGCGc- -3' miRNA: 3'- -GGUCGaagCUCCGCGUGCGCG---CGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 42382 | 0.73 | 0.377126 |
Target: 5'- aCCGGCgacccgGAGGCGcCGCgGCGCGCGg- -3' miRNA: 3'- -GGUCGaag---CUCCGC-GUG-CGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 110357 | 0.73 | 0.385234 |
Target: 5'- gCCuGCcgCGGGcGCGCGgGCGCGCGg- -3' miRNA: 3'- -GGuCGaaGCUC-CGCGUgCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 55205 | 0.72 | 0.401791 |
Target: 5'- gCAGCUUCGugguGGCGCGcCGCaaggaccagaccGCGCGUu -3' miRNA: 3'- gGUCGAAGCu---CCGCGU-GCG------------CGCGCAc -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 100207 | 0.72 | 0.410238 |
Target: 5'- gCCuGCUcuaCGAcggccGGCGcCGCGUGCGCGUGa -3' miRNA: 3'- -GGuCGAa--GCU-----CCGC-GUGCGCGCGCAC- -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 112580 | 0.72 | 0.418794 |
Target: 5'- cCCAuGaa-CGAGGUGCcCGCGUGCGUGu -3' miRNA: 3'- -GGU-CgaaGCUCCGCGuGCGCGCGCAC- -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 50391 | 0.72 | 0.427457 |
Target: 5'- cCUGGCgcgGGGGCGCGC-CGCGCGUc -3' miRNA: 3'- -GGUCGaagCUCCGCGUGcGCGCGCAc -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 96082 | 0.71 | 0.463139 |
Target: 5'- uCCGGCguacaCGGGGCaCGCGgGCGCGg- -3' miRNA: 3'- -GGUCGaa---GCUCCGcGUGCgCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 66617 | 0.73 | 0.361259 |
Target: 5'- aCCAGCacUCGGuGGUgcuggaGCACGCGCGCGa- -3' miRNA: 3'- -GGUCGa-AGCU-CCG------CGUGCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 76397 | 0.73 | 0.353501 |
Target: 5'- aCCGuGCgcgCGGGGCGCugGCGCcCGUc -3' miRNA: 3'- -GGU-CGaa-GCUCCGCGugCGCGcGCAc -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 50752 | 0.73 | 0.345862 |
Target: 5'- --uGCUcgugaUCGcGGGCGCACGCGUGCGg- -3' miRNA: 3'- gguCGA-----AGC-UCCGCGUGCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 66088 | 0.8 | 0.143218 |
Target: 5'- gCGGCggCgGAGGCGCugugcggcgucuGCGCGCGCGUGg -3' miRNA: 3'- gGUCGaaG-CUCCGCG------------UGCGCGCGCAC- -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 125942 | 0.79 | 0.150618 |
Target: 5'- cCCcGCUgcUCGAGGCGgGCGUGgGCGUGa -3' miRNA: 3'- -GGuCGA--AGCUCCGCgUGCGCgCGCAC- -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 101212 | 0.79 | 0.16237 |
Target: 5'- gCCuGCUUCgcggaggucgcgGAGGCGUcCGCGCGCGUGc -3' miRNA: 3'- -GGuCGAAG------------CUCCGCGuGCGCGCGCAC- -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 99694 | 0.78 | 0.179321 |
Target: 5'- aCAGCUUCGAcGCGC-UGCGCGCGg- -3' miRNA: 3'- gGUCGAAGCUcCGCGuGCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 121554 | 0.76 | 0.228684 |
Target: 5'- uCCGGCaccuccUCGAGcGCgGCGCGCGCGCGg- -3' miRNA: 3'- -GGUCGa-----AGCUC-CG-CGUGCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 29704 | 0.76 | 0.257426 |
Target: 5'- aCCGGaCggacgcgCGAGGCGCgcacGCGCGCGCGg- -3' miRNA: 3'- -GGUC-Gaa-----GCUCCGCG----UGCGCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 122099 | 0.74 | 0.30946 |
Target: 5'- aCCAGC-UCGucGCGCACG-GCGCGg- -3' miRNA: 3'- -GGUCGaAGCucCGCGUGCgCGCGCac -5' |
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25675 | 5' | -59.3 | NC_005337.1 | + | 67867 | 0.74 | 0.322219 |
Target: 5'- gCAGCgcggugagguugUCGAGGCGCAgCGCGUGCu-- -3' miRNA: 3'- gGUCGa-----------AGCUCCGCGU-GCGCGCGcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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