miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25675 5' -59.3 NC_005337.1 + 808 0.68 0.618148
Target:  5'- aCCAGCUcCGcGGaGCcguccGCGCGCGCGg- -3'
miRNA:   3'- -GGUCGAaGCuCCgCG-----UGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 808 0.68 0.618148
Target:  5'- aCCAGCUcCGcGGaGCcguccGCGCGCGCGg- -3'
miRNA:   3'- -GGUCGAaGCuCCgCG-----UGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 854 0.66 0.737081
Target:  5'- -aGGCggCG-GGCaGCGCGgGCGCGg- -3'
miRNA:   3'- ggUCGaaGCuCCG-CGUGCgCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 854 0.66 0.737081
Target:  5'- -aGGCggCG-GGCaGCGCGgGCGCGg- -3'
miRNA:   3'- ggUCGaaGCuCCG-CGUGCgCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 928 0.67 0.668301
Target:  5'- gCGGCggCGAGGCG-GCGgaGCGCGg- -3'
miRNA:   3'- gGUCGaaGCUCCGCgUGCg-CGCGCac -5'
25675 5' -59.3 NC_005337.1 + 928 0.67 0.668301
Target:  5'- gCGGCggCGAGGCG-GCGgaGCGCGg- -3'
miRNA:   3'- gGUCGaaGCUCCGCgUGCg-CGCGCac -5'
25675 5' -59.3 NC_005337.1 + 976 0.71 0.472302
Target:  5'- -gAGCggCGGGGCugGCGCgGCGCGCGg- -3'
miRNA:   3'- ggUCGaaGCUCCG--CGUG-CGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 976 0.71 0.472302
Target:  5'- -gAGCggCGGGGCugGCGCgGCGCGCGg- -3'
miRNA:   3'- ggUCGaaGCUCCG--CGUG-CGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 1107 0.66 0.764483
Target:  5'- gCAGCgccgccgcCGGGaGCagccgcaGCACGCGCGCGa- -3'
miRNA:   3'- gGUCGaa------GCUC-CG-------CGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 1107 0.66 0.764483
Target:  5'- gCAGCgccgccgcCGGGaGCagccgcaGCACGCGCGCGa- -3'
miRNA:   3'- gGUCGaa------GCUC-CG-------CGUGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 1145 0.66 0.765413
Target:  5'- aCCAGCUccgCGGGGaGCGCGC-CgGCGg- -3'
miRNA:   3'- -GGUCGAa--GCUCCgCGUGCGcG-CGCac -5'
25675 5' -59.3 NC_005337.1 + 1186 0.67 0.698116
Target:  5'- gCGGUgcgCGAGcGCgGCACGgGCGCGc- -3'
miRNA:   3'- gGUCGaa-GCUC-CG-CGUGCgCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 1632 0.66 0.765413
Target:  5'- aUCGGaggUCGAuGCGCGCGCcCGCGg- -3'
miRNA:   3'- -GGUCga-AGCUcCGCGUGCGcGCGCac -5'
25675 5' -59.3 NC_005337.1 + 2075 0.66 0.726482
Target:  5'- gCAGCagC-AGGCGCACggugucgGCGCGCGc- -3'
miRNA:   3'- gGUCGaaGcUCCGCGUG-------CGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 2334 0.67 0.668301
Target:  5'- uCCAGCgggagaauaggUCGcGGCGCACGaucCGCGCcagGUGc -3'
miRNA:   3'- -GGUCGa----------AGCuCCGCGUGC---GCGCG---CAC- -5'
25675 5' -59.3 NC_005337.1 + 2345 0.68 0.628188
Target:  5'- aCAGCUcCGGGGCcaGCGCGC-CGCa-- -3'
miRNA:   3'- gGUCGAaGCUCCG--CGUGCGcGCGcac -5'
25675 5' -59.3 NC_005337.1 + 2483 0.68 0.658295
Target:  5'- gCGGCUauguUCGGGuacGCGCGCaGCaGCGUGUGu -3'
miRNA:   3'- gGUCGA----AGCUC---CGCGUG-CG-CGCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 3383 0.66 0.756071
Target:  5'- gCGGCcaUGAGGUGCA-GCG-GCGUGu -3'
miRNA:   3'- gGUCGaaGCUCCGCGUgCGCgCGCAC- -5'
25675 5' -59.3 NC_005337.1 + 4128 0.67 0.698116
Target:  5'- -aAGCgcgCGAG-CGCcaGCGCGCGCGa- -3'
miRNA:   3'- ggUCGaa-GCUCcGCG--UGCGCGCGCac -5'
25675 5' -59.3 NC_005337.1 + 5578 0.66 0.72745
Target:  5'- gCCAGCcgCGucGC-CA-GCGCGCGUGc -3'
miRNA:   3'- -GGUCGaaGCucCGcGUgCGCGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.