miRNA display CGI


Results 1 - 20 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 84563 0.66 0.46802
Target:  5'- aACG-CGCGGCaGCGCGugaCCGCgaGGGUg -3'
miRNA:   3'- gUGCgGCGCCGaCGCGUg--GGCG--UCCA- -5'
25684 3' -64.6 NC_005337.1 + 100225 0.66 0.46802
Target:  5'- gGCGCCGCGuGCgcgugaucGCGguCCCGCccgccaugaccGGGa -3'
miRNA:   3'- gUGCGGCGC-CGa-------CGCguGGGCG-----------UCCa -5'
25684 3' -64.6 NC_005337.1 + 74933 0.66 0.459102
Target:  5'- uCGCGCgCGCGGCcGCGCGgaUGC-GGUg -3'
miRNA:   3'- -GUGCG-GCGCCGaCGCGUggGCGuCCA- -5'
25684 3' -64.6 NC_005337.1 + 93803 0.66 0.450276
Target:  5'- uGCGUCaGCaGCUGCGCAgCUGCGGc- -3'
miRNA:   3'- gUGCGG-CGcCGACGCGUgGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 78296 0.66 0.450276
Target:  5'- gGCGCCGUacuccaGGCUGgggagguggccCGCGCCaagcuGCAGGUc -3'
miRNA:   3'- gUGCGGCG------CCGAC-----------GCGUGGg----CGUCCA- -5'
25684 3' -64.6 NC_005337.1 + 37643 0.66 0.459102
Target:  5'- gGCGCCGCGGUcGgGCuucaCCGCGauGGg -3'
miRNA:   3'- gUGCGGCGCCGaCgCGug--GGCGU--CCa -5'
25684 3' -64.6 NC_005337.1 + 122904 0.66 0.46802
Target:  5'- -cCGCCGaUGGCgaGCGCGCUCG-AGGg -3'
miRNA:   3'- guGCGGC-GCCGa-CGCGUGGGCgUCCa -5'
25684 3' -64.6 NC_005337.1 + 99606 0.66 0.467124
Target:  5'- uGCGCCGUgagcaacGGCUacgucGUGCGCgUGCGGGa -3'
miRNA:   3'- gUGCGGCG-------CCGA-----CGCGUGgGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 66099 0.66 0.459102
Target:  5'- gGCGCUguGCGGCgucUGCGCGCgCGUGGaGUu -3'
miRNA:   3'- gUGCGG--CGCCG---ACGCGUGgGCGUC-CA- -5'
25684 3' -64.6 NC_005337.1 + 1148 0.66 0.459102
Target:  5'- aGCuCCGCgGGgaGCGCGCCgGCGGa- -3'
miRNA:   3'- gUGcGGCG-CCgaCGCGUGGgCGUCca -5'
25684 3' -64.6 NC_005337.1 + 716 0.66 0.46802
Target:  5'- gCACGcCCGCGGCcGCGgGguaCGCGGGc -3'
miRNA:   3'- -GUGC-GGCGCCGaCGCgUgg-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 27196 0.66 0.450276
Target:  5'- cCGCGCacaGCGGCacccccugGCGCGCcgccgCCGcCAGGUc -3'
miRNA:   3'- -GUGCGg--CGCCGa-------CGCGUG-----GGC-GUCCA- -5'
25684 3' -64.6 NC_005337.1 + 58416 0.66 0.458216
Target:  5'- gUACGCCaucGCGGCgGCGCcgcuccuguuuauGCCCGCGa-- -3'
miRNA:   3'- -GUGCGG---CGCCGaCGCG-------------UGGGCGUcca -5'
25684 3' -64.6 NC_005337.1 + 128400 0.66 0.459102
Target:  5'- cCAUGCUgGCGGCcGCucucgccacGCAgCCGCAGGc -3'
miRNA:   3'- -GUGCGG-CGCCGaCG---------CGUgGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 64658 0.66 0.450276
Target:  5'- -uCGCCGUGGCgGUGCGgCUCGUcgAGGg -3'
miRNA:   3'- guGCGGCGCCGaCGCGU-GGGCG--UCCa -5'
25684 3' -64.6 NC_005337.1 + 57138 0.66 0.459102
Target:  5'- aCGCGCUgcucgGCGGCgGCaCGCCCGUcGGa -3'
miRNA:   3'- -GUGCGG-----CGCCGaCGcGUGGGCGuCCa -5'
25684 3' -64.6 NC_005337.1 + 133541 0.66 0.449399
Target:  5'- gGCGCCGCGcucucGCccGCGUACCCcgcggccGCGGGc -3'
miRNA:   3'- gUGCGGCGC-----CGa-CGCGUGGG-------CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 69854 0.66 0.459102
Target:  5'- aCACGCUGUGGCcGCcaaGCGgCCGCugcuGGa -3'
miRNA:   3'- -GUGCGGCGCCGaCG---CGUgGGCGu---CCa -5'
25684 3' -64.6 NC_005337.1 + 118755 0.66 0.498979
Target:  5'- uGCGCUGCuGCUGCGCgacguccuagaugacGCCgGCGGc- -3'
miRNA:   3'- gUGCGGCGcCGACGCG---------------UGGgCGUCca -5'
25684 3' -64.6 NC_005337.1 + 1853 0.66 0.46802
Target:  5'- uCGCaGCCGCGGCUGaugaGCuCCucgaagauCGCGGGc -3'
miRNA:   3'- -GUG-CGGCGCCGACg---CGuGG--------GCGUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.