miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 573 0.73 0.175898
Target:  5'- gUACGCCGCGGCcGCGCggaaGCCgccggcgaacgccaCGCAGGc -3'
miRNA:   3'- -GUGCGGCGCCGaCGCG----UGG--------------GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 573 0.73 0.175898
Target:  5'- gUACGCCGCGGCcGCGCggaaGCCgccggcgaacgccaCGCAGGc -3'
miRNA:   3'- -GUGCGGCGCCGaCGCG----UGG--------------GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 716 0.66 0.46802
Target:  5'- gCACGcCCGCGGCcGCGgGguaCGCGGGc -3'
miRNA:   3'- -GUGC-GGCGCCGaCGCgUgg-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 716 0.66 0.46802
Target:  5'- gCACGcCCGCGGCcGCGgGguaCGCGGGc -3'
miRNA:   3'- -GUGC-GGCGCCGaCGCgUgg-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 871 0.67 0.391261
Target:  5'- gGCGCgGCcgGGCggaagaGCGCGCCgaGCAGGa -3'
miRNA:   3'- gUGCGgCG--CCGa-----CGCGUGGg-CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 871 0.67 0.391261
Target:  5'- gGCGCgGCcgGGCggaagaGCGCGCCgaGCAGGa -3'
miRNA:   3'- gUGCGgCG--CCGa-----CGCGUGGg-CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 1148 0.66 0.459102
Target:  5'- aGCuCCGCgGGgaGCGCGCCgGCGGa- -3'
miRNA:   3'- gUGcGGCG-CCgaCGCGUGGgCGUCca -5'
25684 3' -64.6 NC_005337.1 + 1674 0.69 0.337524
Target:  5'- -cCGCCGCGucGUUGCgGUGCCCGguGGc -3'
miRNA:   3'- guGCGGCGC--CGACG-CGUGGGCguCCa -5'
25684 3' -64.6 NC_005337.1 + 1853 0.66 0.46802
Target:  5'- uCGCaGCCGCGGCUGaugaGCuCCucgaagauCGCGGGc -3'
miRNA:   3'- -GUG-CGGCGCCGACg---CGuGG--------GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 2360 0.71 0.239449
Target:  5'- gCGCGCCGCagcaccGGUcgaccgcguccacgUGCGCGCCCGCcuccAGGa -3'
miRNA:   3'- -GUGCGGCG------CCG--------------ACGCGUGGGCG----UCCa -5'
25684 3' -64.6 NC_005337.1 + 2498 0.67 0.432909
Target:  5'- cCGCGCCGaGGCUcaGCaGCugCCGCAccucGGa -3'
miRNA:   3'- -GUGCGGCgCCGA--CG-CGugGGCGU----CCa -5'
25684 3' -64.6 NC_005337.1 + 2798 0.66 0.495288
Target:  5'- -gUGCCGCauguGCacuagGCGCugCUGCAGGa -3'
miRNA:   3'- guGCGGCGc---CGa----CGCGugGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 2854 0.66 0.450276
Target:  5'- gACGgaguCCGCGGagccGCGCGCCaGCGGGa -3'
miRNA:   3'- gUGC----GGCGCCga--CGCGUGGgCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 3403 0.69 0.328155
Target:  5'- uGCGCCaucugguaguaggaGCGGUUGaCGUACCCGCGcuuGGa -3'
miRNA:   3'- gUGCGG--------------CGCCGAC-GCGUGGGCGU---CCa -5'
25684 3' -64.6 NC_005337.1 + 3646 0.71 0.219618
Target:  5'- aGCGCCGCGGCcucgucguccGCGCAgUCGgGGGUc -3'
miRNA:   3'- gUGCGGCGCCGa---------CGCGUgGGCgUCCA- -5'
25684 3' -64.6 NC_005337.1 + 4586 0.66 0.477026
Target:  5'- gGCGCgGCGaCUGCGCguGCUggUGCAGGa -3'
miRNA:   3'- gUGCGgCGCcGACGCG--UGG--GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 4754 0.69 0.295241
Target:  5'- uCGCGCCGCGcGCgagcaGCGCgucgaugACgCGCGGGUc -3'
miRNA:   3'- -GUGCGGCGC-CGa----CGCG-------UGgGCGUCCA- -5'
25684 3' -64.6 NC_005337.1 + 5583 0.67 0.407606
Target:  5'- cCGCGUCGCcaGCgcGCGUGCCCgGCGGGg -3'
miRNA:   3'- -GUGCGGCGc-CGa-CGCGUGGG-CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 5859 0.67 0.398563
Target:  5'- gCugGCCuGCGGCUGCGUggcgagagcggccGCCaGCAuGGa -3'
miRNA:   3'- -GugCGG-CGCCGACGCG-------------UGGgCGU-CCa -5'
25684 3' -64.6 NC_005337.1 + 10235 0.73 0.164738
Target:  5'- --aGCCGCGGCagGCGCGCggccuUCGCGGGg -3'
miRNA:   3'- gugCGGCGCCGa-CGCGUG-----GGCGUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.