miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 25350 0.71 0.224836
Target:  5'- cCACGUCGCGGC-GCGU-CUCGCuGGUg -3'
miRNA:   3'- -GUGCGGCGCCGaCGCGuGGGCGuCCA- -5'
25684 3' -64.6 NC_005337.1 + 68493 0.73 0.181509
Target:  5'- gGCGCCGC-GCUGCugGCGgCCGUGGGUg -3'
miRNA:   3'- gUGCGGCGcCGACG--CGUgGGCGUCCA- -5'
25684 3' -64.6 NC_005337.1 + 115337 0.73 0.185931
Target:  5'- gACGCCcgGCGGCgggcggaucUGCGUGCCCGCGGa- -3'
miRNA:   3'- gUGCGG--CGCCG---------ACGCGUGGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 29539 0.72 0.195063
Target:  5'- uCGCGCgGCGGCcGUGCACCCacucgcugcuCAGGUg -3'
miRNA:   3'- -GUGCGgCGCCGaCGCGUGGGc---------GUCCA- -5'
25684 3' -64.6 NC_005337.1 + 42396 0.72 0.204584
Target:  5'- gGCGCCGCGGCgcgcggccucgcUGUGCGCCgGCuucGGc -3'
miRNA:   3'- gUGCGGCGCCG------------ACGCGUGGgCGu--CCa -5'
25684 3' -64.6 NC_005337.1 + 59014 0.72 0.214504
Target:  5'- aGCGCCguGCGGUcGUgGCGCCCGCuGGUg -3'
miRNA:   3'- gUGCGG--CGCCGaCG-CGUGGGCGuCCA- -5'
25684 3' -64.6 NC_005337.1 + 104651 0.72 0.214504
Target:  5'- uCACGCUGgacaaGGCcaccgUGCGCugCCGCGGGc -3'
miRNA:   3'- -GUGCGGCg----CCG-----ACGCGugGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 132062 0.71 0.219618
Target:  5'- gCGCGCuCGCGGCccggGcCGCGCCCGCGu-- -3'
miRNA:   3'- -GUGCG-GCGCCGa---C-GCGUGGGCGUcca -5'
25684 3' -64.6 NC_005337.1 + 13807 0.71 0.224309
Target:  5'- cCGCGCgauccagCGCGcGCUcgaGCGCGCCCcGCAGGg -3'
miRNA:   3'- -GUGCG-------GCGC-CGA---CGCGUGGG-CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 123598 0.73 0.177179
Target:  5'- --aGCUGCGGCcgcacgUGcCGCGCUCGCGGGUg -3'
miRNA:   3'- gugCGGCGCCG------AC-GCGUGGGCGUCCA- -5'
25684 3' -64.6 NC_005337.1 + 573 0.73 0.175898
Target:  5'- gUACGCCGCGGCcGCGCggaaGCCgccggcgaacgccaCGCAGGc -3'
miRNA:   3'- -GUGCGGCGCCGaCGCG----UGG--------------GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 99658 0.73 0.168795
Target:  5'- gCAuCGCCgcGCGGCUggGCGCGCCCGUGGcGUg -3'
miRNA:   3'- -GU-GCGG--CGCCGA--CGCGUGGGCGUC-CA- -5'
25684 3' -64.6 NC_005337.1 + 73457 0.75 0.11947
Target:  5'- uCGCGCgGCGGUgccGCGUGCCCGCGGa- -3'
miRNA:   3'- -GUGCGgCGCCGa--CGCGUGGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 17580 0.75 0.11947
Target:  5'- cCGCGCCauuGCGGCcgGCuCGCCCGCGGGc -3'
miRNA:   3'- -GUGCGG---CGCCGa-CGcGUGGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 98884 0.75 0.122496
Target:  5'- cCGCGCgCGCGGaCUGCGCGCUCGagccCGGGg -3'
miRNA:   3'- -GUGCG-GCGCC-GACGCGUGGGC----GUCCa -5'
25684 3' -64.6 NC_005337.1 + 68566 0.75 0.128761
Target:  5'- gCGCGCCccaccgcguGCGGCUGUGCACCaaCAGGg -3'
miRNA:   3'- -GUGCGG---------CGCCGACGCGUGGgcGUCCa -5'
25684 3' -64.6 NC_005337.1 + 16036 0.74 0.14574
Target:  5'- aCGCGCUGCGGCgccUGC-CGCCgCGCGGGc -3'
miRNA:   3'- -GUGCGGCGCCG---ACGcGUGG-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 98058 0.74 0.14574
Target:  5'- gCGCGCCGCGGCcgGCGCaaaaaacgacgaACCCGCGc-- -3'
miRNA:   3'- -GUGCGGCGCCGa-CGCG------------UGGGCGUcca -5'
25684 3' -64.6 NC_005337.1 + 103632 0.74 0.14574
Target:  5'- cCGCGCCGCgcgccauccucGGCUGCGCGCaggccaaGCAGGc -3'
miRNA:   3'- -GUGCGGCG-----------CCGACGCGUGgg-----CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 132951 0.74 0.149372
Target:  5'- -cCGCCGCGGCcucgugcacGUGCACCUGguGGUc -3'
miRNA:   3'- guGCGGCGCCGa--------CGCGUGGGCguCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.