miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 3' -64.6 NC_005337.1 + 37444 1.06 0.000698
Target:  5'- cCACGCCGCGGCUGCGCACCCGCAGGUc -3'
miRNA:   3'- -GUGCGGCGCCGACGCGUGGGCGUCCA- -5'
25684 3' -64.6 NC_005337.1 + 34849 0.79 0.064849
Target:  5'- cCACGCCGCGGCUcagcaCGCACCCGCcgcccgcGGUg -3'
miRNA:   3'- -GUGCGGCGCCGAc----GCGUGGGCGu------CCA- -5'
25684 3' -64.6 NC_005337.1 + 105214 0.78 0.08172
Target:  5'- gGgGCCGCuGaGCUGCGCGCUCGCGGGc -3'
miRNA:   3'- gUgCGGCG-C-CGACGCGUGGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 42600 0.77 0.088224
Target:  5'- gGCGUCGCGGCUGCuaGCGCCCGCcauGUg -3'
miRNA:   3'- gUGCGGCGCCGACG--CGUGGGCGuc-CA- -5'
25684 3' -64.6 NC_005337.1 + 103239 0.76 0.116515
Target:  5'- -cUGCCGCuGgUGCGCGCCCGCGcGGUg -3'
miRNA:   3'- guGCGGCGcCgACGCGUGGGCGU-CCA- -5'
25684 3' -64.6 NC_005337.1 + 17580 0.75 0.11947
Target:  5'- cCGCGCCauuGCGGCcgGCuCGCCCGCGGGc -3'
miRNA:   3'- -GUGCGG---CGCCGa-CGcGUGGGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 73457 0.75 0.11947
Target:  5'- uCGCGCgGCGGUgccGCGUGCCCGCGGa- -3'
miRNA:   3'- -GUGCGgCGCCGa--CGCGUGGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 98884 0.75 0.122496
Target:  5'- cCGCGCgCGCGGaCUGCGCGCUCGagccCGGGg -3'
miRNA:   3'- -GUGCG-GCGCC-GACGCGUGGGC----GUCCa -5'
25684 3' -64.6 NC_005337.1 + 68566 0.75 0.128761
Target:  5'- gCGCGCCccaccgcguGCGGCUGUGCACCaaCAGGg -3'
miRNA:   3'- -GUGCGG---------CGCCGACGCGUGGgcGUCCa -5'
25684 3' -64.6 NC_005337.1 + 100101 0.75 0.132004
Target:  5'- gCGCGCCGCGuggaGCUGCGCAucCCCGUGGa- -3'
miRNA:   3'- -GUGCGGCGC----CGACGCGU--GGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 64345 0.75 0.13667
Target:  5'- gGCGCCGCGGCgGUacacagccguguccaGCGCgCGCAGGa -3'
miRNA:   3'- gUGCGGCGCCGaCG---------------CGUGgGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 23910 0.74 0.138716
Target:  5'- uCGCuGCCGCGcGCccGCGCGCCCGCGGc- -3'
miRNA:   3'- -GUG-CGGCGC-CGa-CGCGUGGGCGUCca -5'
25684 3' -64.6 NC_005337.1 + 103632 0.74 0.14574
Target:  5'- cCGCGCCGCgcgccauccucGGCUGCGCGCaggccaaGCAGGc -3'
miRNA:   3'- -GUGCGGCG-----------CCGACGCGUGgg-----CGUCCa -5'
25684 3' -64.6 NC_005337.1 + 98058 0.74 0.14574
Target:  5'- gCGCGCCGCGGCcgGCGCaaaaaacgacgaACCCGCGc-- -3'
miRNA:   3'- -GUGCGGCGCCGa-CGCG------------UGGGCGUcca -5'
25684 3' -64.6 NC_005337.1 + 16036 0.74 0.14574
Target:  5'- aCGCGCUGCGGCgccUGC-CGCCgCGCGGGc -3'
miRNA:   3'- -GUGCGGCGCCG---ACGcGUGG-GCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 132951 0.74 0.149372
Target:  5'- -cCGCCGCGGCcucgugcacGUGCACCUGguGGUc -3'
miRNA:   3'- guGCGGCGCCGa--------CGCGUGGGCguCCA- -5'
25684 3' -64.6 NC_005337.1 + 53601 0.74 0.153087
Target:  5'- uGCGCgCGCGGaaGCGCGCCgCGCAGa- -3'
miRNA:   3'- gUGCG-GCGCCgaCGCGUGG-GCGUCca -5'
25684 3' -64.6 NC_005337.1 + 40467 0.74 0.153087
Target:  5'- aGCGCCGCaGCUGCGCAgCCUGCuGa- -3'
miRNA:   3'- gUGCGGCGcCGACGCGU-GGGCGuCca -5'
25684 3' -64.6 NC_005337.1 + 10235 0.73 0.164738
Target:  5'- --aGCCGCGGCagGCGCGCggccuUCGCGGGg -3'
miRNA:   3'- gugCGGCGCCGa-CGCGUG-----GGCGUCCa -5'
25684 3' -64.6 NC_005337.1 + 107062 0.73 0.164738
Target:  5'- cCugGCgGCGGCgGCGCGCCaGgGGGUg -3'
miRNA:   3'- -GugCGgCGCCGaCGCGUGGgCgUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.