miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25684 5' -59.7 NC_005337.1 + 57272 0.66 0.729422
Target:  5'- gGGGCCgCGCGGGGccGGCGCGcgcGGCUGcGGc -3'
miRNA:   3'- -UCUGG-GUGCCCC--UCGUGC---UUGGC-CUu -5'
25684 5' -59.7 NC_005337.1 + 103931 0.66 0.729422
Target:  5'- --gUCCGCGGGGcugguGUACGAGCCcGAGg -3'
miRNA:   3'- ucuGGGUGCCCCu----CGUGCUUGGcCUU- -5'
25684 5' -59.7 NC_005337.1 + 68492 0.66 0.729422
Target:  5'- cGGugCgCACcGGGGGCGCGGacagcGCCGGc- -3'
miRNA:   3'- -UCugG-GUGcCCCUCGUGCU-----UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 33969 0.66 0.729422
Target:  5'- aGGACUCGCGGGGGaCGC-AGCCcaGGAu -3'
miRNA:   3'- -UCUGGGUGCCCCUcGUGcUUGG--CCUu -5'
25684 5' -59.7 NC_005337.1 + 2576 0.66 0.729422
Target:  5'- cGGACuCCAUGGcGGccAGCGCGGuuauuGCCGGu- -3'
miRNA:   3'- -UCUG-GGUGCC-CC--UCGUGCU-----UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 77433 0.66 0.719659
Target:  5'- gAGGCCCGCGuGGAGgGC-AugUGGAGg -3'
miRNA:   3'- -UCUGGGUGCcCCUCgUGcUugGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 37412 0.66 0.709823
Target:  5'- -cAUCCGCGcGGAGuCGCGgAGCCGGGGg -3'
miRNA:   3'- ucUGGGUGCcCCUC-GUGC-UUGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 42797 0.66 0.709823
Target:  5'- uGACCUucgUGGcGGcGCACGAgaGCCGGAu -3'
miRNA:   3'- uCUGGGu--GCC-CCuCGUGCU--UGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 48315 0.66 0.709823
Target:  5'- cGGugC-GCGGGcgcgcugacGGGCAUGAGCCGGGc -3'
miRNA:   3'- -UCugGgUGCCC---------CUCGUGCUUGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 89569 0.66 0.709823
Target:  5'- cGGCCgCACGucGAGCACaccACCGGAAa -3'
miRNA:   3'- uCUGG-GUGCccCUCGUGcu-UGGCCUU- -5'
25684 5' -59.7 NC_005337.1 + 110013 0.66 0.699923
Target:  5'- cAGACUCAgCGucGGGAGCAUGAuguugGCgGGAAc -3'
miRNA:   3'- -UCUGGGU-GC--CCCUCGUGCU-----UGgCCUU- -5'
25684 5' -59.7 NC_005337.1 + 2707 0.66 0.696941
Target:  5'- uGGGgaCGCGGaGGAGCACGAgcgcgacgacguccGCCGGu- -3'
miRNA:   3'- -UCUggGUGCC-CCUCGUGCU--------------UGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 15220 0.66 0.689967
Target:  5'- cGACacaCCGCGaGGAGguCGAACCGGu- -3'
miRNA:   3'- uCUG---GGUGCcCCUCguGCUUGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 129485 0.67 0.679964
Target:  5'- -uGCCuCACGGGGGcguGCACGGACCc--- -3'
miRNA:   3'- ucUGG-GUGCCCCU---CGUGCUUGGccuu -5'
25684 5' -59.7 NC_005337.1 + 66234 0.67 0.679964
Target:  5'- -cGCCUcCGGGGAGCGuuCGAaGCUGGAc -3'
miRNA:   3'- ucUGGGuGCCCCUCGU--GCU-UGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 36609 0.67 0.679964
Target:  5'- -cGCCCGCGGccuGGAGCGCGcgcgcGACCGa-- -3'
miRNA:   3'- ucUGGGUGCC---CCUCGUGC-----UUGGCcuu -5'
25684 5' -59.7 NC_005337.1 + 61747 0.67 0.679964
Target:  5'- uAGACCaCGCGGGuGucCAgGAACCGGc- -3'
miRNA:   3'- -UCUGG-GUGCCC-CucGUgCUUGGCCuu -5'
25684 5' -59.7 NC_005337.1 + 23168 0.67 0.669923
Target:  5'- uGACCCGCGuGGaGGCGCu-GCUGGAc -3'
miRNA:   3'- uCUGGGUGC-CCcUCGUGcuUGGCCUu -5'
25684 5' -59.7 NC_005337.1 + 1061 0.67 0.659852
Target:  5'- gAGGCCgGCGGGGgcggacugcGGgACGGAgCGGGc -3'
miRNA:   3'- -UCUGGgUGCCCC---------UCgUGCUUgGCCUu -5'
25684 5' -59.7 NC_005337.1 + 974 0.67 0.659852
Target:  5'- uGGAgCgGCGGGGcuGGCGCGGcGCgCGGAGg -3'
miRNA:   3'- -UCUgGgUGCCCC--UCGUGCU-UG-GCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.