Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25687 | 5' | -60.9 | NC_005337.1 | + | 36511 | 1.1 | 0.000866 |
Target: 5'- uCGCGCAGCGCGCGCGUGAUCUCGGGGg -3' miRNA: 3'- -GCGCGUCGCGCGCGCACUAGAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 42531 | 0.8 | 0.119748 |
Target: 5'- gGCGCA-CGCGCGCGUGG-C-CGGGGg -3' miRNA: 3'- gCGCGUcGCGCGCGCACUaGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 100225 | 0.78 | 0.142648 |
Target: 5'- gGCGCcGCGUGCGCGUGAUCgCGGu- -3' miRNA: 3'- gCGCGuCGCGCGCGCACUAGaGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 90648 | 0.78 | 0.161389 |
Target: 5'- uCGCGCGGCG-GCGC-UGAUCUCGGa- -3' miRNA: 3'- -GCGCGUCGCgCGCGcACUAGAGCCcc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 86184 | 0.76 | 0.2208 |
Target: 5'- aGCGCAuGCGCGCGCGcuUGAaCUCcGGGc -3' miRNA: 3'- gCGCGU-CGCGCGCGC--ACUaGAGcCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 121569 | 0.76 | 0.2208 |
Target: 5'- aGCGCGGCGCGCGCGcgGAcgCcacCGGGa -3' miRNA: 3'- gCGCGUCGCGCGCGCa-CUa-Ga--GCCCc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 38605 | 0.75 | 0.22607 |
Target: 5'- aGCGCAGCGUGgGCGUGc---UGGGGa -3' miRNA: 3'- gCGCGUCGCGCgCGCACuagaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 97068 | 0.75 | 0.231446 |
Target: 5'- aCGCGCGGCGCGCG-GUGGUCUgCGu-- -3' miRNA: 3'- -GCGCGUCGCGCGCgCACUAGA-GCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 129533 | 0.75 | 0.254035 |
Target: 5'- gCGCGCGGCGCgaGCGUccGUGAUCUCGa-- -3' miRNA: 3'- -GCGCGUCGCG--CGCG--CACUAGAGCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 98879 | 0.74 | 0.265993 |
Target: 5'- cCGCGCcGCGCGCGCG-GAcugcgcgcUCgagccCGGGGa -3' miRNA: 3'- -GCGCGuCGCGCGCGCaCU--------AGa----GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 59739 | 0.74 | 0.284779 |
Target: 5'- cCGCGCGGCGgaGCGCGUcuccgcGAgCUCGGuGGa -3' miRNA: 3'- -GCGCGUCGCg-CGCGCA------CUaGAGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 102017 | 0.74 | 0.291269 |
Target: 5'- uCGUGCAGCGCGCggGCGUGAUCgCGu-- -3' miRNA: 3'- -GCGCGUCGCGCG--CGCACUAGaGCccc -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 29722 | 0.73 | 0.311434 |
Target: 5'- gCGCGCAcGCGCGCGCgGUGuug-CGGcGGa -3' miRNA: 3'- -GCGCGU-CGCGCGCG-CACuagaGCC-CC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 31908 | 0.73 | 0.311434 |
Target: 5'- aGCGCGGUggccagGUGCGCGgc--CUCGGGGg -3' miRNA: 3'- gCGCGUCG------CGCGCGCacuaGAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 10982 | 0.72 | 0.339208 |
Target: 5'- cCGCGCAGCGCGUGCGgcacgGAcacggucaccaugUC-CGaGGGc -3' miRNA: 3'- -GCGCGUCGCGCGCGCa----CU-------------AGaGC-CCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 5574 | 0.72 | 0.339944 |
Target: 5'- gCGCGcCAGCcgcgucgccaGCGCGCGUGccCggCGGGGg -3' miRNA: 3'- -GCGC-GUCG----------CGCGCGCACuaGa-GCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 68638 | 0.72 | 0.362538 |
Target: 5'- aGCGUGGCGgagGgGCG-GAUCUUGGGGu -3' miRNA: 3'- gCGCGUCGCg--CgCGCaCUAGAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 104198 | 0.72 | 0.362538 |
Target: 5'- uGCGCgAGCGC-CGCGccAUcCUCGGGGa -3' miRNA: 3'- gCGCG-UCGCGcGCGCacUA-GAGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 38479 | 0.71 | 0.382946 |
Target: 5'- gCGCGCcgGGCGCGCGCGUcgccgagcuggccGAcgacgucgccgcgaUCgCGGGGa -3' miRNA: 3'- -GCGCG--UCGCGCGCGCA-------------CU--------------AGaGCCCC- -5' |
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25687 | 5' | -60.9 | NC_005337.1 | + | 13821 | 0.71 | 0.386153 |
Target: 5'- gCGCGCucgAGCGCGCcccGCaggGA-CUCGGGGg -3' miRNA: 3'- -GCGCG---UCGCGCG---CGca-CUaGAGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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