miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 3' -53.6 NC_005337.1 + 68493 0.66 0.952892
Target:  5'- gGCGccGCGCuGCugGcGGCCGUGgGUGCg -3'
miRNA:   3'- -UGCa-UGCGcUGugUcUCGGCAC-UACG- -5'
25735 3' -53.6 NC_005337.1 + 69611 0.66 0.954507
Target:  5'- uCGUGCGCaucuucgccgacgugGACAUGGAcGCCGcGAUGg -3'
miRNA:   3'- uGCAUGCG---------------CUGUGUCU-CGGCaCUACg -5'
25735 3' -53.6 NC_005337.1 + 79641 0.66 0.956858
Target:  5'- gAUGUACGCGuGCACGGucacuGCCuccuUGAUGa -3'
miRNA:   3'- -UGCAUGCGC-UGUGUCu----CGGc---ACUACg -5'
25735 3' -53.6 NC_005337.1 + 130178 0.66 0.948688
Target:  5'- cCGUGCGCGcggagcACGCGGAGCUcauccUGGagUGCg -3'
miRNA:   3'- uGCAUGCGC------UGUGUCUCGGc----ACU--ACG- -5'
25735 3' -53.6 NC_005337.1 + 68780 0.66 0.96059
Target:  5'- -aGUACcacccUGACugGGAGCCgGUGGUGg -3'
miRNA:   3'- ugCAUGc----GCUGugUCUCGG-CACUACg -5'
25735 3' -53.6 NC_005337.1 + 80697 0.66 0.96059
Target:  5'- cAUGUGCGCGAggaaguucuccCACGuGAGCUGgu-UGCu -3'
miRNA:   3'- -UGCAUGCGCU-----------GUGU-CUCGGCacuACG- -5'
25735 3' -53.6 NC_005337.1 + 109420 0.66 0.952892
Target:  5'- gGCGUGCGCGAcCACGuccucGAGCaCGcGccGCu -3'
miRNA:   3'- -UGCAUGCGCU-GUGU-----CUCG-GCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 126224 0.66 0.94738
Target:  5'- -aGUGCGUGAuggagcuggcccucCGCAaGGCCGUGGaccUGCu -3'
miRNA:   3'- ugCAUGCGCU--------------GUGUcUCGGCACU---ACG- -5'
25735 3' -53.6 NC_005337.1 + 20510 0.66 0.964093
Target:  5'- uGCGUGacCGCaccGACAguGAGCaCGUcGAUGUc -3'
miRNA:   3'- -UGCAU--GCG---CUGUguCUCG-GCA-CUACG- -5'
25735 3' -53.6 NC_005337.1 + 10434 0.66 0.964093
Target:  5'- gACGccUGCGCGGCGguGcGCgCGUcGUGCg -3'
miRNA:   3'- -UGC--AUGCGCUGUguCuCG-GCAcUACG- -5'
25735 3' -53.6 NC_005337.1 + 11313 0.66 0.964093
Target:  5'- cGCGgGCGuUGGCGCAGAGguCCGUcccAUGCg -3'
miRNA:   3'- -UGCaUGC-GCUGUGUCUC--GGCAc--UACG- -5'
25735 3' -53.6 NC_005337.1 + 23059 0.66 0.952892
Target:  5'- cACGccGCGCGccggaACGCGGcGGCCGUGcccggcaucGUGCg -3'
miRNA:   3'- -UGCa-UGCGC-----UGUGUC-UCGGCAC---------UACG- -5'
25735 3' -53.6 NC_005337.1 + 37390 0.66 0.956858
Target:  5'- ---gGCGCGACACcGuGUCGaaGAUGCa -3'
miRNA:   3'- ugcaUGCGCUGUGuCuCGGCa-CUACG- -5'
25735 3' -53.6 NC_005337.1 + 42563 0.66 0.956858
Target:  5'- uGCGgcUGCGGCugGaGGCCGcGggGCu -3'
miRNA:   3'- -UGCauGCGCUGugUcUCGGCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 24326 0.66 0.964093
Target:  5'- uCGUcgACgGCaGCACGGAGaCCGcGGUGCa -3'
miRNA:   3'- uGCA--UG-CGcUGUGUCUC-GGCaCUACG- -5'
25735 3' -53.6 NC_005337.1 + 65740 0.66 0.944242
Target:  5'- cCGUcacuaGCGCGGCACgcucAGAGCCGagcgcgGgcGCa -3'
miRNA:   3'- uGCA-----UGCGCUGUG----UCUCGGCa-----CuaCG- -5'
25735 3' -53.6 NC_005337.1 + 2208 0.66 0.944242
Target:  5'- cGCGgGCGCGGCcCGG-GCCGcGA-GCg -3'
miRNA:   3'- -UGCaUGCGCUGuGUCuCGGCaCUaCG- -5'
25735 3' -53.6 NC_005337.1 + 49734 0.66 0.944242
Target:  5'- aGCGggACGCcgGACACGGugcGCCgGUGcGUGCg -3'
miRNA:   3'- -UGCa-UGCG--CUGUGUCu--CGG-CAC-UACG- -5'
25735 3' -53.6 NC_005337.1 + 104472 0.66 0.944242
Target:  5'- -aGUACGCGgagcACGCGGAGCaCGcgcaGcgGCg -3'
miRNA:   3'- ugCAUGCGC----UGUGUCUCG-GCa---CuaCG- -5'
25735 3' -53.6 NC_005337.1 + 120407 0.66 0.964093
Target:  5'- uCGUugGCuccGACACcguccuGAGCCGgcagGcgGCg -3'
miRNA:   3'- uGCAugCG---CUGUGu-----CUCGGCa---CuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.