miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 3' -53.6 NC_005337.1 + 1589 0.69 0.840107
Target:  5'- uUGUGCGCGACGauguugucCAGGGgCGUGAUc- -3'
miRNA:   3'- uGCAUGCGCUGU--------GUCUCgGCACUAcg -5'
25735 3' -53.6 NC_005337.1 + 120306 0.72 0.728601
Target:  5'- cACGgcgGCGCGguACACGGucGCCGacgGGUGCa -3'
miRNA:   3'- -UGCa--UGCGC--UGUGUCu-CGGCa--CUACG- -5'
25735 3' -53.6 NC_005337.1 + 6848 0.71 0.777534
Target:  5'- uUGgccCGCGGCACGGucGCCagGUGGUGCa -3'
miRNA:   3'- uGCau-GCGCUGUGUCu-CGG--CACUACG- -5'
25735 3' -53.6 NC_005337.1 + 26079 0.71 0.777534
Target:  5'- aAUGUaGCGCGGCGCGGGgaagcGCCGccgGAUGUc -3'
miRNA:   3'- -UGCA-UGCGCUGUGUCU-----CGGCa--CUACG- -5'
25735 3' -53.6 NC_005337.1 + 78983 0.71 0.786953
Target:  5'- -gGUGCGUGGCGCGGcuguaGGCCccgGUGAUGg -3'
miRNA:   3'- ugCAUGCGCUGUGUC-----UCGG---CACUACg -5'
25735 3' -53.6 NC_005337.1 + 33536 0.7 0.814304
Target:  5'- gGCGgagaGCGCgGACAcCAGAGCCGUGu--- -3'
miRNA:   3'- -UGCa---UGCG-CUGU-GUCUCGGCACuacg -5'
25735 3' -53.6 NC_005337.1 + 117307 0.7 0.814304
Target:  5'- cGCGUACGCGAacacCGCGGGgaucGCCGUcacGGUGg -3'
miRNA:   3'- -UGCAUGCGCU----GUGUCU----CGGCA---CUACg -5'
25735 3' -53.6 NC_005337.1 + 130077 0.7 0.823088
Target:  5'- cGCGU-CGCuGACGCAG-GCCGuUGAgGCc -3'
miRNA:   3'- -UGCAuGCG-CUGUGUCuCGGC-ACUaCG- -5'
25735 3' -53.6 NC_005337.1 + 35935 0.7 0.831692
Target:  5'- cACGUGCGUGACGaAGuccguGCCGuUGcgGCu -3'
miRNA:   3'- -UGCAUGCGCUGUgUCu----CGGC-ACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 67145 0.72 0.698123
Target:  5'- ---cGCGCGGCACuucgcGA-CCGUGAUGCg -3'
miRNA:   3'- ugcaUGCGCUGUGu----CUcGGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 66081 0.72 0.698123
Target:  5'- cGCGgcCGCGGCgGCGGAggcGCUGUGcgGCg -3'
miRNA:   3'- -UGCauGCGCUG-UGUCU---CGGCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 115472 0.73 0.667125
Target:  5'- gGCGUACuCGcaccggugcacGCACGGGGCCGUGGacgucaggUGCg -3'
miRNA:   3'- -UGCAUGcGC-----------UGUGUCUCGGCACU--------ACG- -5'
25735 3' -53.6 NC_005337.1 + 32064 0.81 0.264176
Target:  5'- gGCGUACGUGu--CGGGGuCCGUGAUGCg -3'
miRNA:   3'- -UGCAUGCGCuguGUCUC-GGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 131372 0.75 0.53263
Target:  5'- aGCGcGCGCGGuacgucuucgacCGCGGGGCCGUGAUcGUg -3'
miRNA:   3'- -UGCaUGCGCU------------GUGUCUCGGCACUA-CG- -5'
25735 3' -53.6 NC_005337.1 + 99633 0.75 0.572435
Target:  5'- cGCGUGCGgGACACGGAcgugcgcggcaucGCCGcGcgGCu -3'
miRNA:   3'- -UGCAUGCgCUGUGUCU-------------CGGCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 132119 0.74 0.583799
Target:  5'- cCGUGCGCGGCAgGcuccgcaacugcGAGCUgGUGGUGCu -3'
miRNA:   3'- uGCAUGCGCUGUgU------------CUCGG-CACUACG- -5'
25735 3' -53.6 NC_005337.1 + 63921 0.74 0.587943
Target:  5'- cACGUGCgGCGGCGCAccGCCGUGcggaacgccgucuucGUGCg -3'
miRNA:   3'- -UGCAUG-CGCUGUGUcuCGGCAC---------------UACG- -5'
25735 3' -53.6 NC_005337.1 + 77470 0.74 0.594169
Target:  5'- gGCGUGCGCGGCGacgcguccCGGGGCgGUGcaugGCg -3'
miRNA:   3'- -UGCAUGCGCUGU--------GUCUCGgCACua--CG- -5'
25735 3' -53.6 NC_005337.1 + 99468 0.73 0.645254
Target:  5'- cGCGUGCGCGAgGgcgucuuCGuGGCCGUGcgGCg -3'
miRNA:   3'- -UGCAUGCGCUgU-------GUcUCGGCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 16747 0.73 0.656721
Target:  5'- gAUGUGCGCGGuCACGGcgcGCCGgcUGAUGUc -3'
miRNA:   3'- -UGCAUGCGCU-GUGUCu--CGGC--ACUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.