miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 3' -53.6 NC_005337.1 + 1435 0.67 0.939552
Target:  5'- uGCGaGCGCGGC--GGcGCCGaGGUGCg -3'
miRNA:   3'- -UGCaUGCGCUGugUCuCGGCaCUACG- -5'
25735 3' -53.6 NC_005337.1 + 1589 0.69 0.840107
Target:  5'- uUGUGCGCGACGauguugucCAGGGgCGUGAUc- -3'
miRNA:   3'- uGCAUGCGCUGU--------GUCUCgGCACUAcg -5'
25735 3' -53.6 NC_005337.1 + 2208 0.66 0.944242
Target:  5'- cGCGgGCGCGGCcCGG-GCCGcGA-GCg -3'
miRNA:   3'- -UGCaUGCGCUGuGUCuCGGCaCUaCG- -5'
25735 3' -53.6 NC_005337.1 + 2450 0.69 0.879092
Target:  5'- -gGUACGUG-UGCAGcGCCGUGuUGCc -3'
miRNA:   3'- ugCAUGCGCuGUGUCuCGGCACuACG- -5'
25735 3' -53.6 NC_005337.1 + 2496 0.69 0.879092
Target:  5'- -gGUACGCG-CGCAGcAGCgUGUG-UGCg -3'
miRNA:   3'- ugCAUGCGCuGUGUC-UCG-GCACuACG- -5'
25735 3' -53.6 NC_005337.1 + 4155 1.12 0.00268
Target:  5'- cACGUACGCGACACAGAGCCGUGAUGCg -3'
miRNA:   3'- -UGCAUGCGCUGUGUCUCGGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 5404 0.67 0.934615
Target:  5'- -gGUGCGCagcagcuGCGCAGuucGGCCGUGGUcagGCa -3'
miRNA:   3'- ugCAUGCGc------UGUGUC---UCGGCACUA---CG- -5'
25735 3' -53.6 NC_005337.1 + 5784 0.71 0.776585
Target:  5'- cACGUACGCGACGCAcgcccgcGAGCaCGcGGUcucccGCg -3'
miRNA:   3'- -UGCAUGCGCUGUGU-------CUCG-GCaCUA-----CG- -5'
25735 3' -53.6 NC_005337.1 + 5993 0.67 0.92943
Target:  5'- gGCGcGCGCGuuGCAGAccGCCGc-GUGCa -3'
miRNA:   3'- -UGCaUGCGCugUGUCU--CGGCacUACG- -5'
25735 3' -53.6 NC_005337.1 + 6025 0.69 0.871729
Target:  5'- gGCGgGCGCca-GCAGGGCCGUGc-GCa -3'
miRNA:   3'- -UGCaUGCGcugUGUCUCGGCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 6848 0.71 0.777534
Target:  5'- uUGgccCGCGGCACGGucGCCagGUGGUGCa -3'
miRNA:   3'- uGCau-GCGCUGUGUCu-CGG--CACUACG- -5'
25735 3' -53.6 NC_005337.1 + 8919 0.68 0.899787
Target:  5'- cAUGUACGUG-UGCAGcGCCGUGAa-- -3'
miRNA:   3'- -UGCAUGCGCuGUGUCuCGGCACUacg -5'
25735 3' -53.6 NC_005337.1 + 10434 0.66 0.964093
Target:  5'- gACGccUGCGCGGCGguGcGCgCGUcGUGCg -3'
miRNA:   3'- -UGC--AUGCGCUGUguCuCG-GCAcUACG- -5'
25735 3' -53.6 NC_005337.1 + 11313 0.66 0.964093
Target:  5'- cGCGgGCGuUGGCGCAGAGguCCGUcccAUGCg -3'
miRNA:   3'- -UGCaUGC-GCUGUGUCUC--GGCAc--UACG- -5'
25735 3' -53.6 NC_005337.1 + 14812 0.71 0.76798
Target:  5'- uCGUGCGUGAgCGaGGAcGCCGUGGUGg -3'
miRNA:   3'- uGCAUGCGCU-GUgUCU-CGGCACUACg -5'
25735 3' -53.6 NC_005337.1 + 16136 0.69 0.864144
Target:  5'- gAUGUACgGCGACgugACGGAcGCauCGUGAUGUg -3'
miRNA:   3'- -UGCAUG-CGCUG---UGUCU-CG--GCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 16747 0.73 0.656721
Target:  5'- gAUGUGCGCGGuCACGGcgcGCCGgcUGAUGUc -3'
miRNA:   3'- -UGCAUGCGCU-GUGUCu--CGGC--ACUACG- -5'
25735 3' -53.6 NC_005337.1 + 20510 0.66 0.964093
Target:  5'- uGCGUGacCGCaccGACAguGAGCaCGUcGAUGUc -3'
miRNA:   3'- -UGCAU--GCG---CUGUguCUCG-GCA-CUACG- -5'
25735 3' -53.6 NC_005337.1 + 23059 0.66 0.952892
Target:  5'- cACGccGCGCGccggaACGCGGcGGCCGUGcccggcaucGUGCg -3'
miRNA:   3'- -UGCa-UGCGC-----UGUGUC-UCGGCAC---------UACG- -5'
25735 3' -53.6 NC_005337.1 + 23940 0.68 0.892446
Target:  5'- gGCGcGCGCGACGCGcccggccGGGCCGaacgGCg -3'
miRNA:   3'- -UGCaUGCGCUGUGU-------CUCGGCacuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.