miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25735 3' -53.6 NC_005337.1 + 4155 1.12 0.00268
Target:  5'- cACGUACGCGACACAGAGCCGUGAUGCg -3'
miRNA:   3'- -UGCAUGCGCUGUGUCUCGGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 133068 0.83 0.2115
Target:  5'- cGCGUACGCGGCGcCGGuGGCCGccugGAUGCa -3'
miRNA:   3'- -UGCAUGCGCUGU-GUC-UCGGCa---CUACG- -5'
25735 3' -53.6 NC_005337.1 + 32064 0.81 0.264176
Target:  5'- gGCGUACGUGu--CGGGGuCCGUGAUGCg -3'
miRNA:   3'- -UGCAUGCGCuguGUCUC-GGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 95346 0.77 0.417898
Target:  5'- cCGUGgcgcUGCGACACcggGGAGCCGUcGAUGCc -3'
miRNA:   3'- uGCAU----GCGCUGUG---UCUCGGCA-CUACG- -5'
25735 3' -53.6 NC_005337.1 + 97791 0.77 0.436005
Target:  5'- cGCGgcCGCGGC-CAG-GCCGUGcgGCa -3'
miRNA:   3'- -UGCauGCGCUGuGUCuCGGCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 131372 0.75 0.53263
Target:  5'- aGCGcGCGCGGuacgucuucgacCGCGGGGCCGUGAUcGUg -3'
miRNA:   3'- -UGCaUGCGCU------------GUGUCUCGGCACUA-CG- -5'
25735 3' -53.6 NC_005337.1 + 41605 0.75 0.53263
Target:  5'- gGCGUGguCGUGGCGaAGgaGGCCGUGGUGCg -3'
miRNA:   3'- -UGCAU--GCGCUGUgUC--UCGGCACUACG- -5'
25735 3' -53.6 NC_005337.1 + 30656 0.75 0.53263
Target:  5'- ---cGCGCGGCGCGGAGuuGUGGuugaUGCc -3'
miRNA:   3'- ugcaUGCGCUGUGUCUCggCACU----ACG- -5'
25735 3' -53.6 NC_005337.1 + 35112 0.75 0.542751
Target:  5'- uCGUccGCGCGGCGCGGAcGCCcaGUGcgGCg -3'
miRNA:   3'- uGCA--UGCGCUGUGUCU-CGG--CACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 90498 0.75 0.542751
Target:  5'- -gGUugGCGAUGCuGAGCUGgaaccgGAUGCg -3'
miRNA:   3'- ugCAugCGCUGUGuCUCGGCa-----CUACG- -5'
25735 3' -53.6 NC_005337.1 + 99633 0.75 0.572435
Target:  5'- cGCGUGCGgGACACGGAcgugcgcggcaucGCCGcGcgGCu -3'
miRNA:   3'- -UGCAUGCgCUGUGUCU-------------CGGCaCuaCG- -5'
25735 3' -53.6 NC_005337.1 + 132119 0.74 0.583799
Target:  5'- cCGUGCGCGGCAgGcuccgcaacugcGAGCUgGUGGUGCu -3'
miRNA:   3'- uGCAUGCGCUGUgU------------CUCGG-CACUACG- -5'
25735 3' -53.6 NC_005337.1 + 63921 0.74 0.587943
Target:  5'- cACGUGCgGCGGCGCAccGCCGUGcggaacgccgucuucGUGCg -3'
miRNA:   3'- -UGCAUG-CGCUGUGUcuCGGCAC---------------UACG- -5'
25735 3' -53.6 NC_005337.1 + 77470 0.74 0.594169
Target:  5'- gGCGUGCGCGGCGacgcguccCGGGGCgGUGcaugGCg -3'
miRNA:   3'- -UGCAUGCGCUGU--------GUCUCGgCACua--CG- -5'
25735 3' -53.6 NC_005337.1 + 35341 0.74 0.625422
Target:  5'- gGCGUGCGUGGCGCcgaaguGGAGCCGgcucaccGUGUa -3'
miRNA:   3'- -UGCAUGCGCUGUG------UCUCGGCac-----UACG- -5'
25735 3' -53.6 NC_005337.1 + 99468 0.73 0.645254
Target:  5'- cGCGUGCGCGAgGgcgucuuCGuGGCCGUGcgGCg -3'
miRNA:   3'- -UGCAUGCGCUgU-------GUcUCGGCACuaCG- -5'
25735 3' -53.6 NC_005337.1 + 16747 0.73 0.656721
Target:  5'- gAUGUGCGCGGuCACGGcgcGCCGgcUGAUGUc -3'
miRNA:   3'- -UGCAUGCGCU-GUGUCu--CGGC--ACUACG- -5'
25735 3' -53.6 NC_005337.1 + 115472 0.73 0.667125
Target:  5'- gGCGUACuCGcaccggugcacGCACGGGGCCGUGGacgucaggUGCg -3'
miRNA:   3'- -UGCAUGcGC-----------UGUGUCUCGGCACU--------ACG- -5'
25735 3' -53.6 NC_005337.1 + 118973 0.72 0.697096
Target:  5'- -gGUACGCgGACACGGAGaCGUacaaccaGAUGCu -3'
miRNA:   3'- ugCAUGCG-CUGUGUCUCgGCA-------CUACG- -5'
25735 3' -53.6 NC_005337.1 + 66081 0.72 0.698123
Target:  5'- cGCGgcCGCGGCgGCGGAggcGCUGUGcgGCg -3'
miRNA:   3'- -UGCauGCGCUG-UGUCU---CGGCACuaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.