miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25745 3' -57.5 NC_005337.1 + 99649 0.66 0.845862
Target:  5'- aCGU--GCG-CGGCAUCgCcGCGCGGCUg -3'
miRNA:   3'- -GCAagUGCaGCCGUGG-GuCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 16031 0.66 0.845862
Target:  5'- gGUaCACGcgcugCGGCGCCUGccgccGCGCgGGCCg -3'
miRNA:   3'- gCAaGUGCa----GCCGUGGGU-----CGCG-CUGG- -5'
25745 3' -57.5 NC_005337.1 + 47599 0.66 0.845862
Target:  5'- ----gGCGUgGGCgacGCCgCGcGCGCGGCCg -3'
miRNA:   3'- gcaagUGCAgCCG---UGG-GU-CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 28491 0.66 0.845862
Target:  5'- gCGgcCGCG-CGGCGCgCGgucGCGCGGCa -3'
miRNA:   3'- -GCaaGUGCaGCCGUGgGU---CGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 67142 0.66 0.829715
Target:  5'- ---cCACGcgCGGCACUU--CGCGACCg -3'
miRNA:   3'- gcaaGUGCa-GCCGUGGGucGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 15339 0.66 0.845862
Target:  5'- gCGacgCACG-CuGCGCCC-GCGCGACg -3'
miRNA:   3'- -GCaa-GUGCaGcCGUGGGuCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 41201 0.66 0.868659
Target:  5'- cCGUggagAgGUCGGCGCUUAGCccGCgGACCu -3'
miRNA:   3'- -GCAag--UgCAGCCGUGGGUCG--CG-CUGG- -5'
25745 3' -57.5 NC_005337.1 + 4076 0.66 0.845862
Target:  5'- aGUUgACGUCcGCGCCCaucuucAGCaGCGuCCu -3'
miRNA:   3'- gCAAgUGCAGcCGUGGG------UCG-CGCuGG- -5'
25745 3' -57.5 NC_005337.1 + 75402 0.66 0.837879
Target:  5'- aCGUUCACGUacCGcCGCUCGGCG-GGCg -3'
miRNA:   3'- -GCAAGUGCA--GCcGUGGGUCGCgCUGg -5'
25745 3' -57.5 NC_005337.1 + 32108 0.66 0.837879
Target:  5'- uGUaCAUGgCGGCGCgcauguCCAGCGUGuCCa -3'
miRNA:   3'- gCAaGUGCaGCCGUG------GGUCGCGCuGG- -5'
25745 3' -57.5 NC_005337.1 + 734 0.66 0.828889
Target:  5'- gGUaCGCGggcgagagcgCGGCGCCCgcGGCcucgacgGCGGCCa -3'
miRNA:   3'- gCAaGUGCa---------GCCGUGGG--UCG-------CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 103419 0.66 0.829715
Target:  5'- ---cCGCGaugaccuucUCGGaCAUCCAGCGCGAguucCCg -3'
miRNA:   3'- gcaaGUGC---------AGCC-GUGGGUCGCGCU----GG- -5'
25745 3' -57.5 NC_005337.1 + 3018 0.66 0.837879
Target:  5'- cCGgcagCGCGUgcGCGCCgAuguGCGCGACCa -3'
miRNA:   3'- -GCaa--GUGCAgcCGUGGgU---CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 6890 0.66 0.845072
Target:  5'- cCGUcCAUGUCGcGCGCgcgcggguccgcgCCGGCGCGcagcaucaucGCCa -3'
miRNA:   3'- -GCAaGUGCAGC-CGUG-------------GGUCGCGC----------UGG- -5'
25745 3' -57.5 NC_005337.1 + 110364 0.66 0.845862
Target:  5'- gCGggCGCG-CgGGCGCgCGGCaGCGACa -3'
miRNA:   3'- -GCaaGUGCaG-CCGUGgGUCG-CGCUGg -5'
25745 3' -57.5 NC_005337.1 + 37684 0.66 0.837879
Target:  5'- uGUUCACGcccgugUGGaCGCCCGcGCGCGugaggucguccACCu -3'
miRNA:   3'- gCAAGUGCa-----GCC-GUGGGU-CGCGC-----------UGG- -5'
25745 3' -57.5 NC_005337.1 + 98201 0.66 0.845862
Target:  5'- gCGcgUCACGUCGGaCACggucacaAGCcGCGACUg -3'
miRNA:   3'- -GCa-AGUGCAGCC-GUGgg-----UCG-CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 20647 0.66 0.829715
Target:  5'- -cUUCuuuuCGUCGGCcucGCaCGGCGCgGACCa -3'
miRNA:   3'- gcAAGu---GCAGCCG---UGgGUCGCG-CUGG- -5'
25745 3' -57.5 NC_005337.1 + 121620 0.66 0.828889
Target:  5'- uGUUCGCGUaccugaacacccaCGGCAUCgAcgacGCGgCGACCc -3'
miRNA:   3'- gCAAGUGCA-------------GCCGUGGgU----CGC-GCUGG- -5'
25745 3' -57.5 NC_005337.1 + 77916 0.66 0.845862
Target:  5'- gCGUgcacUACGUCGGUGCCgaagAGCGUGGgCa -3'
miRNA:   3'- -GCAa---GUGCAGCCGUGGg---UCGCGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.