miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25745 3' -57.5 NC_005337.1 + 54215 0.72 0.502387
Target:  5'- gGUUCGCGUCgcagaaGGCGuagaucuccucgUCCGGCGCGuCCg -3'
miRNA:   3'- gCAAGUGCAG------CCGU------------GGGUCGCGCuGG- -5'
25745 3' -57.5 NC_005337.1 + 1503 0.75 0.378572
Target:  5'- cCG-UCACcUCGGCGCgcgCCAGCGCGuCCg -3'
miRNA:   3'- -GCaAGUGcAGCCGUG---GGUCGCGCuGG- -5'
25745 3' -57.5 NC_005337.1 + 133691 0.74 0.394989
Target:  5'- gCGUUCGCcggCGGCuuCC-GCGCGGCCg -3'
miRNA:   3'- -GCAAGUGca-GCCGugGGuCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 17251 0.74 0.403368
Target:  5'- ----aGCGUCGGCagcGCCCggAGCGUGGCCu -3'
miRNA:   3'- gcaagUGCAGCCG---UGGG--UCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 70422 0.74 0.411005
Target:  5'- --aUCGCGUCGGacguggucaagcuCACCgAGCGCGGCg -3'
miRNA:   3'- gcaAGUGCAGCC-------------GUGGgUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 59167 0.74 0.426544
Target:  5'- aCGUUCcucccccaggccguGCGUCGGgGCaCCGGCGaCGGCUg -3'
miRNA:   3'- -GCAAG--------------UGCAGCCgUG-GGUCGC-GCUGG- -5'
25745 3' -57.5 NC_005337.1 + 46448 0.74 0.429168
Target:  5'- uGUUCGCGaUCuGCGCgCGGCGCG-CCg -3'
miRNA:   3'- gCAAGUGC-AGcCGUGgGUCGCGCuGG- -5'
25745 3' -57.5 NC_005337.1 + 89121 0.73 0.446898
Target:  5'- gGUUCugcCGacUGGCGCCgGGCGCGACUa -3'
miRNA:   3'- gCAAGu--GCa-GCCGUGGgUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 77071 0.73 0.474236
Target:  5'- -uUUCGCGggcgCGGCACCCguacgccgaguaGGUGCGGCa -3'
miRNA:   3'- gcAAGUGCa---GCCGUGGG------------UCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 109918 0.75 0.370537
Target:  5'- aCGUgUCGCGUgGGCAugcucUCCAGCGCGgucaGCCa -3'
miRNA:   3'- -GCA-AGUGCAgCCGU-----GGGUCGCGC----UGG- -5'
25745 3' -57.5 NC_005337.1 + 77000 0.75 0.35482
Target:  5'- cCGcgCGCGcCGGC-CCC-GCGCGGCCc -3'
miRNA:   3'- -GCaaGUGCaGCCGuGGGuCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 1436 0.76 0.339579
Target:  5'- gCGagCGCGgCGGCGCCgAgguGCGCGACCa -3'
miRNA:   3'- -GCaaGUGCaGCCGUGGgU---CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 132104 0.88 0.060816
Target:  5'- cCGUgCGCGUCGGCGCCguGCGCGGCa -3'
miRNA:   3'- -GCAaGUGCAGCCGUGGguCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 3737 0.84 0.102804
Target:  5'- uCGUUgACGUUGGCGCCC-GCGCGcACCa -3'
miRNA:   3'- -GCAAgUGCAGCCGUGGGuCGCGC-UGG- -5'
25745 3' -57.5 NC_005337.1 + 623 0.83 0.129588
Target:  5'- ---cCGCGUCGGCGUCCAGCGCGGCg -3'
miRNA:   3'- gcaaGUGCAGCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 36495 0.78 0.234884
Target:  5'- uGgcCGCGgccgCGGCGCUCGGCGCGACg -3'
miRNA:   3'- gCaaGUGCa---GCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 7451 0.78 0.246326
Target:  5'- aGUUCACGUCGGCGuCCguG-GCGACg -3'
miRNA:   3'- gCAAGUGCAGCCGU-GGguCgCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 85582 0.77 0.283429
Target:  5'- aGUUCGagcCGUUGGCGCCCcggaucuGCGCGACg -3'
miRNA:   3'- gCAAGU---GCAGCCGUGGGu------CGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 60038 0.76 0.321924
Target:  5'- aGUUCGgGUCGGCGaugugcuCCCAcagguucaggugguGCGCGACCc -3'
miRNA:   3'- gCAAGUgCAGCCGU-------GGGU--------------CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 42461 0.76 0.339579
Target:  5'- aGUUCGCGaagCGGUACCC-GCGC-ACCg -3'
miRNA:   3'- gCAAGUGCa--GCCGUGGGuCGCGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.