miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25745 3' -57.5 NC_005337.1 + 2158 1.12 0.001321
Target:  5'- gCGUUCACGUCGGCACCCAGCGCGACCa -3'
miRNA:   3'- -GCAAGUGCAGCCGUGGGUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 132104 0.88 0.060816
Target:  5'- cCGUgCGCGUCGGCGCCguGCGCGGCa -3'
miRNA:   3'- -GCAaGUGCAGCCGUGGguCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 12589 0.86 0.081296
Target:  5'- gCGUUCACGUUGGCGCCC-GCGCGGa- -3'
miRNA:   3'- -GCAAGUGCAGCCGUGGGuCGCGCUgg -5'
25745 3' -57.5 NC_005337.1 + 5188 0.85 0.097603
Target:  5'- aGUUUACGUCuGCGCCCucggccagcAGCGCGACCa -3'
miRNA:   3'- gCAAGUGCAGcCGUGGG---------UCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3737 0.84 0.102804
Target:  5'- uCGUUgACGUUGGCGCCC-GCGCGcACCa -3'
miRNA:   3'- -GCAAgUGCAGCCGUGGGuCGCGC-UGG- -5'
25745 3' -57.5 NC_005337.1 + 623 0.83 0.129588
Target:  5'- ---cCGCGUCGGCGUCCAGCGCGGCg -3'
miRNA:   3'- gcaaGUGCAGCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 623 0.83 0.129588
Target:  5'- ---cCGCGUCGGCGUCCAGCGCGGCg -3'
miRNA:   3'- gcaaGUGCAGCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 8638 0.82 0.139867
Target:  5'- gCGUUCACGUCcGCGCCgAGgGCGAUCa -3'
miRNA:   3'- -GCAAGUGCAGcCGUGGgUCgCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 98719 0.81 0.158669
Target:  5'- cCGcUCGCG-CGGCGCCCuGCGCGugCu -3'
miRNA:   3'- -GCaAGUGCaGCCGUGGGuCGCGCugG- -5'
25745 3' -57.5 NC_005337.1 + 131347 0.81 0.16681
Target:  5'- cCGUgCGCGUCGGCACuCCGGCGaCG-CCg -3'
miRNA:   3'- -GCAaGUGCAGCCGUG-GGUCGC-GCuGG- -5'
25745 3' -57.5 NC_005337.1 + 36257 0.79 0.229332
Target:  5'- ---gCcCGUCGGUGgCCAGCGCGACCa -3'
miRNA:   3'- gcaaGuGCAGCCGUgGGUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 36495 0.78 0.234884
Target:  5'- uGgcCGCGgccgCGGCGCUCGGCGCGACg -3'
miRNA:   3'- gCaaGUGCa---GCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 7451 0.78 0.246326
Target:  5'- aGUUCACGUCGGCGuCCguG-GCGACg -3'
miRNA:   3'- gCAAGUGCAGCCGU-GGguCgCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 89199 0.78 0.26435
Target:  5'- aGggCACGUCGGCACggaucuCCGGC-CGGCCg -3'
miRNA:   3'- gCaaGUGCAGCCGUG------GGUCGcGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 10296 0.78 0.266832
Target:  5'- gCGcgCGCaUCGGCGCCguucgcgucuaugugCAGCGCGACCg -3'
miRNA:   3'- -GCaaGUGcAGCCGUGG---------------GUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 38139 0.77 0.27567
Target:  5'- gCGUUC-CGgcucaccggccgCGGCAUCCuGCGCGGCCg -3'
miRNA:   3'- -GCAAGuGCa-----------GCCGUGGGuCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 85582 0.77 0.283429
Target:  5'- aGUUCGagcCGUUGGCGCCCcggaucuGCGCGACg -3'
miRNA:   3'- gCAAGU---GCAGCCGUGGGu------CGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 35112 0.77 0.296744
Target:  5'- uCGUccgCGCGgcgCGGaCGCCCAGUGCGGCg -3'
miRNA:   3'- -GCAa--GUGCa--GCC-GUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 36893 0.76 0.317618
Target:  5'- gGUUCGCG-CGGCGC--GGCGUGGCCg -3'
miRNA:   3'- gCAAGUGCaGCCGUGggUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 60038 0.76 0.321924
Target:  5'- aGUUCGgGUCGGCGaugugcuCCCAcagguucaggugguGCGCGACCc -3'
miRNA:   3'- gCAAGUgCAGCCGU-------GGGU--------------CGCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.