miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25745 3' -57.5 NC_005337.1 + 623 0.83 0.129588
Target:  5'- ---cCGCGUCGGCGUCCAGCGCGGCg -3'
miRNA:   3'- gcaaGUGCAGCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 623 0.83 0.129588
Target:  5'- ---cCGCGUCGGCGUCCAGCGCGGCg -3'
miRNA:   3'- gcaaGUGCAGCCGUGGGUCGCGCUGg -5'
25745 3' -57.5 NC_005337.1 + 734 0.66 0.828889
Target:  5'- gGUaCGCGggcgagagcgCGGCGCCCgcGGCcucgacgGCGGCCa -3'
miRNA:   3'- gCAaGUGCa---------GCCGUGGG--UCG-------CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 734 0.66 0.828889
Target:  5'- gGUaCGCGggcgagagcgCGGCGCCCgcGGCcucgacgGCGGCCa -3'
miRNA:   3'- gCAaGUGCa---------GCCGUGGG--UCG-------CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 1174 0.71 0.560678
Target:  5'- uGUUCACGgagCGcacggaucuccuGCAUCCAG-GCGGCCa -3'
miRNA:   3'- gCAAGUGCa--GC------------CGUGGGUCgCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 1436 0.76 0.339579
Target:  5'- gCGagCGCGgCGGCGCCgAgguGCGCGACCa -3'
miRNA:   3'- -GCaaGUGCaGCCGUGGgU---CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 1503 0.75 0.378572
Target:  5'- cCG-UCACcUCGGCGCgcgCCAGCGCGuCCg -3'
miRNA:   3'- -GCaAGUGcAGCCGUG---GGUCGCGCuGG- -5'
25745 3' -57.5 NC_005337.1 + 1996 0.68 0.758793
Target:  5'- --cUCGCGUCGGacgACCgCAGCagcaCGGCCa -3'
miRNA:   3'- gcaAGUGCAGCCg--UGG-GUCGc---GCUGG- -5'
25745 3' -57.5 NC_005337.1 + 2158 1.12 0.001321
Target:  5'- gCGUUCACGUCGGCACCCAGCGCGACCa -3'
miRNA:   3'- -GCAAGUGCAGCCGUGGGUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 2185 0.68 0.768127
Target:  5'- aCGcgCACGgcgcaggCGGCggACgCgGGCGCGGCCc -3'
miRNA:   3'- -GCaaGUGCa------GCCG--UG-GgUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 2866 0.69 0.720457
Target:  5'- -----cCGaUCGGCGCcucaCCAGCGUGGCCg -3'
miRNA:   3'- gcaaguGC-AGCCGUG----GGUCGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3018 0.66 0.837879
Target:  5'- cCGgcagCGCGUgcGCGCCgAuguGCGCGACCa -3'
miRNA:   3'- -GCaa--GUGCAgcCGUGGgU---CGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3083 0.68 0.777345
Target:  5'- cCGcgCACcUCGGCGacggCCAGCgacuccGCGACCg -3'
miRNA:   3'- -GCaaGUGcAGCCGUg---GGUCG------CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3221 0.71 0.600566
Target:  5'- --gUCACGUCcGCACCCAgggccaggaggcGCGCGcacGCCu -3'
miRNA:   3'- gcaAGUGCAGcCGUGGGU------------CGCGC---UGG- -5'
25745 3' -57.5 NC_005337.1 + 3326 0.67 0.816293
Target:  5'- aCGgcCACGcCGGCGUCCAGgaacggcuggaucaGCGACCg -3'
miRNA:   3'- -GCaaGUGCaGCCGUGGGUCg-------------CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3461 0.69 0.700813
Target:  5'- --aUCACGgCGGCACUgGGUcgucGCGACUg -3'
miRNA:   3'- gcaAGUGCaGCCGUGGgUCG----CGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3497 0.66 0.861259
Target:  5'- ---gCACcggCGGCGCCCAggucuGCGCGAaguCCa -3'
miRNA:   3'- gcaaGUGca-GCCGUGGGU-----CGCGCU---GG- -5'
25745 3' -57.5 NC_005337.1 + 3529 0.71 0.58055
Target:  5'- gGUgcaCACGUCGG-ACCCAGCG--GCCa -3'
miRNA:   3'- gCAa--GUGCAGCCgUGGGUCGCgcUGG- -5'
25745 3' -57.5 NC_005337.1 + 3678 0.67 0.812872
Target:  5'- gGUcUUGCGUC-GCGCCCGaCGCGGCUu -3'
miRNA:   3'- gCA-AGUGCAGcCGUGGGUcGCGCUGG- -5'
25745 3' -57.5 NC_005337.1 + 3737 0.84 0.102804
Target:  5'- uCGUUgACGUUGGCGCCC-GCGCGcACCa -3'
miRNA:   3'- -GCAAgUGCAGCCGUGGGuCGCGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.