miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25746 3' -50.2 NC_005337.1 + 121843 0.66 0.992418
Target:  5'- -aCGCCG-GAGGACa-UGGUugACGCGCu -3'
miRNA:   3'- aaGUGGUaCUUCUGcaACCA--UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 24832 0.66 0.990497
Target:  5'- cUCGCCGUgcucGAgcggcgcgugcucgaGGACG-UGGUcGCGCACg -3'
miRNA:   3'- aAGUGGUA----CU---------------UCUGCaACCA-UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 12918 0.66 0.989961
Target:  5'- cUUC-CCGUGcgccGAGugGcUGGUGCgGCGCg -3'
miRNA:   3'- -AAGuGGUAC----UUCugCaACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 80080 0.66 0.989961
Target:  5'- --aACCcgGAcGACGUccGGUGCGCGu -3'
miRNA:   3'- aagUGGuaCUuCUGCAa-CCAUGCGUg -5'
25746 3' -50.2 NC_005337.1 + 36555 0.66 0.989961
Target:  5'- gUCGCCGagGAAGACca-GGUcCGCACc -3'
miRNA:   3'- aAGUGGUa-CUUCUGcaaCCAuGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 3731 0.66 0.989961
Target:  5'- aUC-CCGUcGuuGACGUUGGcgcccGCGCGCa -3'
miRNA:   3'- aAGuGGUA-CuuCUGCAACCa----UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 81859 0.66 0.988519
Target:  5'- -gCGuCCGUGAAGAgGaUGGUGCaGUACc -3'
miRNA:   3'- aaGU-GGUACUUCUgCaACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 18113 0.66 0.988519
Target:  5'- -aCACCuugGAGGACucgaUGGUGCGCuCg -3'
miRNA:   3'- aaGUGGua-CUUCUGca--ACCAUGCGuG- -5'
25746 3' -50.2 NC_005337.1 + 55867 0.66 0.988519
Target:  5'- -cCGCCAUGGAGGCcaccgaUGcGUGCgGCGCa -3'
miRNA:   3'- aaGUGGUACUUCUGca----AC-CAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 131228 0.66 0.988519
Target:  5'- -cCGCCgGUGuguGGCGUacgUGGUcGCGCACa -3'
miRNA:   3'- aaGUGG-UACuu-CUGCA---ACCA-UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 13741 0.66 0.988519
Target:  5'- cUUCACCAUGAacauGGucccGCGguccaUGGUGCaGCGCc -3'
miRNA:   3'- -AAGUGGUACU----UC----UGCa----ACCAUG-CGUG- -5'
25746 3' -50.2 NC_005337.1 + 127032 0.66 0.988212
Target:  5'- --gACCAUGcuGGCGgcgggcgcggaGGUGCGCACc -3'
miRNA:   3'- aagUGGUACuuCUGCaa---------CCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 60594 0.66 0.986409
Target:  5'- -gCGCCG-GAAGGCGUUGuagccguugaccuuGUGCGaCACg -3'
miRNA:   3'- aaGUGGUaCUUCUGCAAC--------------CAUGC-GUG- -5'
25746 3' -50.2 NC_005337.1 + 77412 0.67 0.985156
Target:  5'- gUCGCCAUGcgcuGGCGgUGcaUGCGCACg -3'
miRNA:   3'- aAGUGGUACuu--CUGCaACc-AUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 103434 0.67 0.983216
Target:  5'- gUCACCGaGAAcGCGcUGGUcucgACGCGCu -3'
miRNA:   3'- aAGUGGUaCUUcUGCaACCA----UGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 29314 0.67 0.981091
Target:  5'- gUUCAucugggUCAUGAAGACcUUGGaUACGUGCg -3'
miRNA:   3'- -AAGU------GGUACUUCUGcAACC-AUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 78619 0.67 0.981091
Target:  5'- cUUGCCGcgGGAGACGUUcgaGGUGaGCGCg -3'
miRNA:   3'- aAGUGGUa-CUUCUGCAA---CCAUgCGUG- -5'
25746 3' -50.2 NC_005337.1 + 52008 0.67 0.981091
Target:  5'- -aCGCCGUGAcGGACGgccGcGCGCGCg -3'
miRNA:   3'- aaGUGGUACU-UCUGCaacCaUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 94806 0.67 0.981091
Target:  5'- gUCGCCGgcacGGAGGCGUcguacuccaUcGUGCGCACc -3'
miRNA:   3'- aAGUGGUa---CUUCUGCA---------AcCAUGCGUG- -5'
25746 3' -50.2 NC_005337.1 + 19919 0.67 0.97877
Target:  5'- --gACCAgguAGGGCGUgUGGUACGCGa -3'
miRNA:   3'- aagUGGUac-UUCUGCA-ACCAUGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.