miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 3' -55.2 NC_005337.1 + 25694 0.66 0.8931
Target:  5'- gCGUCgcgCAGgAGCGgguugUCCg-GCCGCGCc -3'
miRNA:   3'- -GUAGaa-GUCgUCGC-----AGGagUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 512 0.66 0.899735
Target:  5'- ----aUCAG-AGC-UCCUCGCgGCGCa -3'
miRNA:   3'- guagaAGUCgUCGcAGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 84130 0.66 0.912284
Target:  5'- aGUCgUUCGGgAGUcuGUCC--ACCGCGCa -3'
miRNA:   3'- gUAG-AAGUCgUCG--CAGGagUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 134236 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 134122 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 101714 0.66 0.8931
Target:  5'- uCAUCa--AGCAcCGgcucaaggacaUCCUCACCGUGCg -3'
miRNA:   3'- -GUAGaagUCGUcGC-----------AGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 31382 0.66 0.90613
Target:  5'- -cUCUUCAuGCcGC--CCUCGCgGCGCa -3'
miRNA:   3'- guAGAAGU-CGuCGcaGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 133939 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 133878 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6278 0.66 0.8931
Target:  5'- aCGUC--CAGCAGCGUCgUguCgGCGUu -3'
miRNA:   3'- -GUAGaaGUCGUCGCAGgAguGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 37871 0.66 0.899735
Target:  5'- gGUCUUCuGCGccaccuCGUCCUCcGCCGCcuGCu -3'
miRNA:   3'- gUAGAAGuCGUc-----GCAGGAG-UGGCG--CG- -5'
25747 3' -55.2 NC_005337.1 + 134000 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 29585 0.66 0.899735
Target:  5'- -cUCcUCGGCGGUGUCCgaCGCgGaCGCc -3'
miRNA:   3'- guAGaAGUCGUCGCAGGa-GUGgC-GCG- -5'
25747 3' -55.2 NC_005337.1 + 29140 0.66 0.899735
Target:  5'- cCAUg-UCGGCgacGGcCGUCCggagCGCCGCGUc -3'
miRNA:   3'- -GUAgaAGUCG---UC-GCAGGa---GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 134061 0.66 0.8931
Target:  5'- -cUCgagUCAGCccguccguGCGUCCgugCGuCCGUGCg -3'
miRNA:   3'- guAGa--AGUCGu-------CGCAGGa--GU-GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 35551 0.66 0.8931
Target:  5'- ----gUCAGCAcGCG-CagggCGCCGCGCg -3'
miRNA:   3'- guagaAGUCGU-CGCaGga--GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 88434 0.66 0.90613
Target:  5'- -uUCUUCcuGCAGCGccuggacuUCCUCACCuCGa -3'
miRNA:   3'- guAGAAGu-CGUCGC--------AGGAGUGGcGCg -5'
25747 3' -55.2 NC_005337.1 + 103491 0.66 0.8931
Target:  5'- --gCUUCAGCAaCGUCUgcgacuCCGUGCa -3'
miRNA:   3'- guaGAAGUCGUcGCAGGagu---GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 51623 0.66 0.897769
Target:  5'- -uUCUUCGGCgacgagcugcggucGGCGcUCCgcggUCGCCaGCGCc -3'
miRNA:   3'- guAGAAGUCG--------------UCGC-AGG----AGUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 58037 0.66 0.90613
Target:  5'- -----aCGGCcguGCGcUCCUCaacGCCGCGCu -3'
miRNA:   3'- guagaaGUCGu--CGC-AGGAG---UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.