miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 3' -55.2 NC_005337.1 + 4091 1.12 0.001756
Target:  5'- cCAUCUUCAGCAGCGUCCUCACCGCGCg -3'
miRNA:   3'- -GUAGAAGUCGUCGCAGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 71637 0.89 0.063301
Target:  5'- aCGUCUUcCAGCAGCG-CCUgGCCGCGCa -3'
miRNA:   3'- -GUAGAA-GUCGUCGCaGGAgUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 19063 0.85 0.114639
Target:  5'- cCAUCUUCAGCAGCGcCCgcagcggCACCGUGUc -3'
miRNA:   3'- -GUAGAAGUCGUCGCaGGa------GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6553 0.78 0.314091
Target:  5'- --cCUUCAGCAGCGUggacgCCagCGCUGCGCg -3'
miRNA:   3'- guaGAAGUCGUCGCA-----GGa-GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 45771 0.76 0.368379
Target:  5'- -uUCUUCAGCAccGUuucgGUCUUCACCGCGUc -3'
miRNA:   3'- guAGAAGUCGU--CG----CAGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 12697 0.76 0.402167
Target:  5'- cCGUUccCGGUGGCGUCCgcgcgcgCGCCGCGCu -3'
miRNA:   3'- -GUAGaaGUCGUCGCAGGa------GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 108185 0.74 0.484906
Target:  5'- aCAUC--CGGCGGCGcuUCCccgCGCCGCGCu -3'
miRNA:   3'- -GUAGaaGUCGUCGC--AGGa--GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 8212 0.73 0.564677
Target:  5'- uCGUCcaggUCGGCAagggucGCGUCCgCACCgGCGCg -3'
miRNA:   3'- -GUAGa---AGUCGU------CGCAGGaGUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 40237 0.73 0.564677
Target:  5'- aGUCgUCGGCcGCG-CCgCGCCGCGCc -3'
miRNA:   3'- gUAGaAGUCGuCGCaGGaGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 4171 0.72 0.585225
Target:  5'- cCGUCUUCcauGaCGGCGUCCuccaUCACCGgGUg -3'
miRNA:   3'- -GUAGAAGu--C-GUCGCAGG----AGUGGCgCG- -5'
25747 3' -55.2 NC_005337.1 + 54079 0.72 0.592453
Target:  5'- -uUCUUCAGCGcccgcggcaggagcGCGUCCgcgCGCCG-GCa -3'
miRNA:   3'- guAGAAGUCGU--------------CGCAGGa--GUGGCgCG- -5'
25747 3' -55.2 NC_005337.1 + 12556 0.72 0.595555
Target:  5'- --aCgugCAGCGGCGUcuuguccgCCUCcCCGCGCg -3'
miRNA:   3'- guaGaa-GUCGUCGCA--------GGAGuGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 121507 0.72 0.605912
Target:  5'- uCAUCgcggCAGCGGCgGUCUUCGgCGCGa -3'
miRNA:   3'- -GUAGaa--GUCGUCG-CAGGAGUgGCGCg -5'
25747 3' -55.2 NC_005337.1 + 86143 0.72 0.613175
Target:  5'- cCAUCUUCAGCGcGCaguugauggaccagGUCUUCACgaaGCGCu -3'
miRNA:   3'- -GUAGAAGUCGU-CG--------------CAGGAGUGg--CGCG- -5'
25747 3' -55.2 NC_005337.1 + 33999 0.72 0.61629
Target:  5'- gCGUCUcCAGCGGCGUCaggaggagCACC-CGCu -3'
miRNA:   3'- -GUAGAaGUCGUCGCAGga------GUGGcGCG- -5'
25747 3' -55.2 NC_005337.1 + 51061 0.72 0.61629
Target:  5'- gAUCUUCcGCAGCGgcuccauccccaUCCUCAugguccuggagUCGCGCa -3'
miRNA:   3'- gUAGAAGuCGUCGC------------AGGAGU-----------GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 50875 0.71 0.637074
Target:  5'- cCAUCUUCAGCAcCG-CCUacaACgGCGCc -3'
miRNA:   3'- -GUAGAAGUCGUcGCaGGAg--UGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 66387 0.71 0.641231
Target:  5'- aCcgCUUCgAGCAcGCGcugcgccucgacaaCCUCACCGCGCu -3'
miRNA:   3'- -GuaGAAG-UCGU-CGCa-------------GGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 109235 0.71 0.646426
Target:  5'- --gCgcgCAGCAGC-UCCUCgguguccGCCGCGCg -3'
miRNA:   3'- guaGaa-GUCGUCGcAGGAG-------UGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 55512 0.71 0.647465
Target:  5'- gAUCUUCGGcCGGCaGcCCUCGCUGCa- -3'
miRNA:   3'- gUAGAAGUC-GUCG-CaGGAGUGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.