miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 3' -55.2 NC_005337.1 + 512 0.66 0.899735
Target:  5'- ----aUCAG-AGC-UCCUCGCgGCGCa -3'
miRNA:   3'- guagaAGUCgUCGcAGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 512 0.66 0.899735
Target:  5'- ----aUCAG-AGC-UCCUCGCgGCGCa -3'
miRNA:   3'- guagaAGUCgUCGcAGGAGUGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 671 0.69 0.75893
Target:  5'- --cCUgcagCAGCAGCGggCCcUugCGCGCg -3'
miRNA:   3'- guaGAa---GUCGUCGCa-GGaGugGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 671 0.69 0.75893
Target:  5'- --cCUgcagCAGCAGCGggCCcUugCGCGCg -3'
miRNA:   3'- guaGAa---GUCGUCGCa-GGaGugGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 1199 0.66 0.8931
Target:  5'- gCAUCca-GGCGGCcaCCggCGCCGCGUa -3'
miRNA:   3'- -GUAGaagUCGUCGcaGGa-GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 1535 0.7 0.708216
Target:  5'- --aCUUCgugugcgGGCGGCGaCCgcuugaUCACCGCGCg -3'
miRNA:   3'- guaGAAG-------UCGUCGCaGG------AGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 2377 0.67 0.864246
Target:  5'- -cUCUaUCGGguGCGUCgaCGacaCGCGCa -3'
miRNA:   3'- guAGA-AGUCguCGCAGgaGUg--GCGCG- -5'
25747 3' -55.2 NC_005337.1 + 2475 0.67 0.886229
Target:  5'- gGUCcUCGGCGGCuauGUUCgggUACgCGCGCa -3'
miRNA:   3'- gUAGaAGUCGUCG---CAGGa--GUG-GCGCG- -5'
25747 3' -55.2 NC_005337.1 + 2849 0.7 0.728381
Target:  5'- gAUCUUgAGCgacuuggccgaucGGCG-CCUCACCaGCGUg -3'
miRNA:   3'- gUAGAAgUCG-------------UCGCaGGAGUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 3113 0.67 0.879127
Target:  5'- gCAUCagcagCAGCAGCGUgUgcaGCaCGCGCc -3'
miRNA:   3'- -GUAGaa---GUCGUCGCAgGag-UG-GCGCG- -5'
25747 3' -55.2 NC_005337.1 + 4091 1.12 0.001756
Target:  5'- cCAUCUUCAGCAGCGUCCUCACCGCGCg -3'
miRNA:   3'- -GUAGAAGUCGUCGCAGGAGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 4171 0.72 0.585225
Target:  5'- cCGUCUUCcauGaCGGCGUCCuccaUCACCGgGUg -3'
miRNA:   3'- -GUAGAAGu--C-GUCGCAGG----AGUGGCgCG- -5'
25747 3' -55.2 NC_005337.1 + 4245 0.67 0.871797
Target:  5'- aGUgUUCAGCgcGGCGaCCgcgGCCGCGUg -3'
miRNA:   3'- gUAgAAGUCG--UCGCaGGag-UGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 4292 0.66 0.8931
Target:  5'- uGUUggcCAGCGGCGUCCU-GCCgGUGUu -3'
miRNA:   3'- gUAGaa-GUCGUCGCAGGAgUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 5751 0.67 0.879127
Target:  5'- -cUCUggcaCGGCGGCGggCggcaGCCGCGCg -3'
miRNA:   3'- guAGAa---GUCGUCGCagGag--UGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6229 0.66 0.912284
Target:  5'- -----gCAGCAGCG-UgUCcCCGCGCg -3'
miRNA:   3'- guagaaGUCGUCGCaGgAGuGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6278 0.66 0.8931
Target:  5'- aCGUC--CAGCAGCGUCgUguCgGCGUu -3'
miRNA:   3'- -GUAGaaGUCGUCGCAGgAguGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6468 0.68 0.823391
Target:  5'- aCGUUgacgUCAGCgccGGCGUCCaccagCACC-CGCa -3'
miRNA:   3'- -GUAGa---AGUCG---UCGCAGGa----GUGGcGCG- -5'
25747 3' -55.2 NC_005337.1 + 6553 0.78 0.314091
Target:  5'- --cCUUCAGCAGCGUggacgCCagCGCUGCGCg -3'
miRNA:   3'- guaGAAGUCGUCGCA-----GGa-GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 6862 0.66 0.917031
Target:  5'- gGUCgccagguggugCAGCAGCGUgCgcccguccaugUCGCgCGCGCg -3'
miRNA:   3'- gUAGaa---------GUCGUCGCAgG-----------AGUG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.