miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 3' -55.2 NC_005337.1 + 22916 0.69 0.749183
Target:  5'- -cUCUUCAGCgacAGCGUCCU--CCGCu- -3'
miRNA:   3'- guAGAAGUCG---UCGCAGGAguGGCGcg -5'
25747 3' -55.2 NC_005337.1 + 55512 0.71 0.647465
Target:  5'- gAUCUUCGGcCGGCaGcCCUCGCUGCa- -3'
miRNA:   3'- gUAGAAGUC-GUCG-CaGGAGUGGCGcg -5'
25747 3' -55.2 NC_005337.1 + 86099 0.71 0.668199
Target:  5'- -cUCccgCAGCAGCG-CCUC-CgCGCGCg -3'
miRNA:   3'- guAGaa-GUCGUCGCaGGAGuG-GCGCG- -5'
25747 3' -55.2 NC_005337.1 + 90920 0.71 0.688813
Target:  5'- --aCgcgCAGCGGCGUCUUCccggcgGCCaGCGCg -3'
miRNA:   3'- guaGaa-GUCGUCGCAGGAG------UGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 75340 0.7 0.699051
Target:  5'- gGUC--CAGCAG-GUCCUCguccacggucGCCGCGCc -3'
miRNA:   3'- gUAGaaGUCGUCgCAGGAG----------UGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 1535 0.7 0.708216
Target:  5'- --aCUUCgugugcgGGCGGCGaCCgcuugaUCACCGCGCg -3'
miRNA:   3'- guaGAAG-------UCGUCGCaGG------AGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 37747 0.7 0.719345
Target:  5'- aGUCgaCGGCGGCGgagaCCUUcUCGCGCa -3'
miRNA:   3'- gUAGaaGUCGUCGCa---GGAGuGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 2849 0.7 0.728381
Target:  5'- gAUCUUgAGCgacuuggccgaucGGCG-CCUCACCaGCGUg -3'
miRNA:   3'- gUAGAAgUCG-------------UCGCaGGAGUGG-CGCG- -5'
25747 3' -55.2 NC_005337.1 + 76950 0.7 0.73933
Target:  5'- -cUCUUUuuaacGCGGCG-CUUgGCCGCGCg -3'
miRNA:   3'- guAGAAGu----CGUCGCaGGAgUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 7358 0.71 0.647465
Target:  5'- --cCUcCAGCAGCGUCUcgacgaUguCCGCGCa -3'
miRNA:   3'- guaGAaGUCGUCGCAGG------AguGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 109235 0.71 0.646426
Target:  5'- --gCgcgCAGCAGC-UCCUCgguguccGCCGCGCg -3'
miRNA:   3'- guaGaa-GUCGUCGcAGGAG-------UGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 50875 0.71 0.637074
Target:  5'- cCAUCUUCAGCAcCG-CCUacaACgGCGCc -3'
miRNA:   3'- -GUAGAAGUCGUcGCaGGAg--UGgCGCG- -5'
25747 3' -55.2 NC_005337.1 + 71637 0.89 0.063301
Target:  5'- aCGUCUUcCAGCAGCG-CCUgGCCGCGCa -3'
miRNA:   3'- -GUAGAA-GUCGUCGCaGGAgUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 19063 0.85 0.114639
Target:  5'- cCAUCUUCAGCAGCGcCCgcagcggCACCGUGUc -3'
miRNA:   3'- -GUAGAAGUCGUCGCaGGa------GUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 40237 0.73 0.564677
Target:  5'- aGUCgUCGGCcGCG-CCgCGCCGCGCc -3'
miRNA:   3'- gUAGaAGUCGuCGCaGGaGUGGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 4171 0.72 0.585225
Target:  5'- cCGUCUUCcauGaCGGCGUCCuccaUCACCGgGUg -3'
miRNA:   3'- -GUAGAAGu--C-GUCGCAGG----AGUGGCgCG- -5'
25747 3' -55.2 NC_005337.1 + 54079 0.72 0.592453
Target:  5'- -uUCUUCAGCGcccgcggcaggagcGCGUCCgcgCGCCG-GCa -3'
miRNA:   3'- guAGAAGUCGU--------------CGCAGGa--GUGGCgCG- -5'
25747 3' -55.2 NC_005337.1 + 86143 0.72 0.613175
Target:  5'- cCAUCUUCAGCGcGCaguugauggaccagGUCUUCACgaaGCGCu -3'
miRNA:   3'- -GUAGAAGUCGU-CG--------------CAGGAGUGg--CGCG- -5'
25747 3' -55.2 NC_005337.1 + 51061 0.72 0.61629
Target:  5'- gAUCUUCcGCAGCGgcuccauccccaUCCUCAugguccuggagUCGCGCa -3'
miRNA:   3'- gUAGAAGuCGUCGC------------AGGAGU-----------GGCGCG- -5'
25747 3' -55.2 NC_005337.1 + 33999 0.72 0.61629
Target:  5'- gCGUCUcCAGCGGCGUCaggaggagCACC-CGCu -3'
miRNA:   3'- -GUAGAaGUCGUCGCAGga------GUGGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.