miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25747 5' -55.5 NC_005337.1 + 1040 0.66 0.888563
Target:  5'- uGCGCGgGaGGCGGGcGGCGGGAGg---- -3'
miRNA:   3'- -UGCGCgC-CUGUCU-CCGUCUUCaucaa -5'
25747 5' -55.5 NC_005337.1 + 1040 0.66 0.888563
Target:  5'- uGCGCGgGaGGCGGGcGGCGGGAGg---- -3'
miRNA:   3'- -UGCGCgC-CUGUCU-CCGUCUUCaucaa -5'
25747 5' -55.5 NC_005337.1 + 41395 0.66 0.882177
Target:  5'- cGCGCGCGGGCAGAugacguccggcguccGCGGGAGc-GUg -3'
miRNA:   3'- -UGCGCGCCUGUCUc--------------CGUCUUCauCAa -5'
25747 5' -55.5 NC_005337.1 + 76327 0.66 0.881456
Target:  5'- cACGgGCGuGGCcguGAGGCAGAGG-AGc- -3'
miRNA:   3'- -UGCgCGC-CUGu--CUCCGUCUUCaUCaa -5'
25747 5' -55.5 NC_005337.1 + 6485 0.66 0.874114
Target:  5'- aGCGCGCGGACgaGGAGGUcGAucGgcGg- -3'
miRNA:   3'- -UGCGCGCCUG--UCUCCGuCUu-CauCaa -5'
25747 5' -55.5 NC_005337.1 + 865 0.66 0.874114
Target:  5'- -aGCGCGGGCGcggccGGGCGGAAG-AGc- -3'
miRNA:   3'- ugCGCGCCUGUc----UCCGUCUUCaUCaa -5'
25747 5' -55.5 NC_005337.1 + 865 0.66 0.874114
Target:  5'- -aGCGCGGGCGcggccGGGCGGAAG-AGc- -3'
miRNA:   3'- ugCGCGCCUGUc----UCCGUCUUCaUCaa -5'
25747 5' -55.5 NC_005337.1 + 96586 0.66 0.873367
Target:  5'- cGCGCGCGGGCGuccacacGGGCGuGAacagcaaGGUGGUg -3'
miRNA:   3'- -UGCGCGCCUGUc------UCCGU-CU-------UCAUCAa -5'
25747 5' -55.5 NC_005337.1 + 69289 0.66 0.866544
Target:  5'- cGCGCGaCGGGCAGuucGcGCGGGAGaAGg- -3'
miRNA:   3'- -UGCGC-GCCUGUCu--C-CGUCUUCaUCaa -5'
25747 5' -55.5 NC_005337.1 + 18078 0.66 0.858752
Target:  5'- cACGCGCuGGCAGAGG-AGc-GUGGUg -3'
miRNA:   3'- -UGCGCGcCUGUCUCCgUCuuCAUCAa -5'
25747 5' -55.5 NC_005337.1 + 107646 0.66 0.858752
Target:  5'- aGCGCGUGGACGacGGCGGGuucaccGUGGa- -3'
miRNA:   3'- -UGCGCGCCUGUcuCCGUCUu-----CAUCaa -5'
25747 5' -55.5 NC_005337.1 + 13654 0.67 0.850743
Target:  5'- gACGCGCGGGau-GGGCAuGAAGaAGUc -3'
miRNA:   3'- -UGCGCGCCUgucUCCGU-CUUCaUCAa -5'
25747 5' -55.5 NC_005337.1 + 28501 0.67 0.845837
Target:  5'- gGCGCGCGGucgcgcggcacuGCGuGGGGCAGGcgcacucguccucggAGUAGa- -3'
miRNA:   3'- -UGCGCGCC------------UGU-CUCCGUCU---------------UCAUCaa -5'
25747 5' -55.5 NC_005337.1 + 830 0.67 0.842525
Target:  5'- cGCGCGCGGGCccGGGCucgacGAAGgcGg- -3'
miRNA:   3'- -UGCGCGCCUGucUCCGu----CUUCauCaa -5'
25747 5' -55.5 NC_005337.1 + 830 0.67 0.842525
Target:  5'- cGCGCGCGGGCccGGGCucgacGAAGgcGg- -3'
miRNA:   3'- -UGCGCGCCUGucUCCGu----CUUCauCaa -5'
25747 5' -55.5 NC_005337.1 + 121708 0.67 0.834106
Target:  5'- cGCGCGCGG--GGAGGCGGAcaAGa---- -3'
miRNA:   3'- -UGCGCGCCugUCUCCGUCU--UCaucaa -5'
25747 5' -55.5 NC_005337.1 + 16807 0.68 0.798573
Target:  5'- uGCGCGUcGGCGGAGGCguugcuguacAGAGGgcgGGUg -3'
miRNA:   3'- -UGCGCGcCUGUCUCCG----------UCUUCa--UCAa -5'
25747 5' -55.5 NC_005337.1 + 5127 0.68 0.78927
Target:  5'- gUGCGCGGGugucuggugUGGAGGUAGAGGUGc-- -3'
miRNA:   3'- uGCGCGCCU---------GUCUCCGUCUUCAUcaa -5'
25747 5' -55.5 NC_005337.1 + 67550 0.68 0.78927
Target:  5'- gGCGUGUccGGGuuGAGGCGGAAGgcGUc -3'
miRNA:   3'- -UGCGCG--CCUguCUCCGUCUUCauCAa -5'
25747 5' -55.5 NC_005337.1 + 10895 0.68 0.78927
Target:  5'- gUGUGCGGggacgggguACAGGGGCGGggGcAGg- -3'
miRNA:   3'- uGCGCGCC---------UGUCUCCGUCuuCaUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.