miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 3' -53.9 NC_005337.1 + 25437 0.66 0.958431
Target:  5'- gCGUGUCGcccGCGCGcuUCGGcAC-CGUGGAc -3'
miRNA:   3'- -GUACAGCa--UGCGC--AGUC-UGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 41852 0.66 0.954589
Target:  5'- --cGUCGgGCGgGagCGGGCUCGUGGc -3'
miRNA:   3'- guaCAGCaUGCgCa-GUCUGAGCGCCu -5'
25750 3' -53.9 NC_005337.1 + 130176 0.66 0.950512
Target:  5'- --gGcCGUGCGCG-CGGAgCaCGCGGAg -3'
miRNA:   3'- guaCaGCAUGCGCaGUCU-GaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 126199 0.66 0.950512
Target:  5'- uGUGcCGUcGCGCGUCcucGCggUCGCGGAg -3'
miRNA:   3'- gUACaGCA-UGCGCAGuc-UG--AGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 29452 0.66 0.946199
Target:  5'- --cGUUGgGCGCGUCAGagcagagcaccaGC-CGCGGGa -3'
miRNA:   3'- guaCAGCaUGCGCAGUC------------UGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 32581 0.66 0.946199
Target:  5'- gAUGaaGUugGCGUaGGACUCGUacuGGAa -3'
miRNA:   3'- gUACagCAugCGCAgUCUGAGCG---CCU- -5'
25750 3' -53.9 NC_005337.1 + 115026 0.66 0.945754
Target:  5'- ----aCG-ACGUGcuggccaagcucaUCAGACUCGCGGAc -3'
miRNA:   3'- guacaGCaUGCGC-------------AGUCUGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 92050 0.66 0.941645
Target:  5'- --gGcCGUGCGCGa---ACUCGCGGAc -3'
miRNA:   3'- guaCaGCAUGCGCagucUGAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 110347 0.67 0.936848
Target:  5'- --cGUCGcGCGCGccugccgCGGGCgCGCGGGc -3'
miRNA:   3'- guaCAGCaUGCGCa------GUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 35852 0.67 0.936848
Target:  5'- ---uUCGUGCGCugcgggggCGGACgCGCGGAa -3'
miRNA:   3'- guacAGCAUGCGca------GUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 95492 0.67 0.931808
Target:  5'- cCAUGcacUCGgGCGCGUCGGGCUccacCGCGc- -3'
miRNA:   3'- -GUAC---AGCaUGCGCAGUCUGA----GCGCcu -5'
25750 3' -53.9 NC_005337.1 + 97662 0.67 0.931808
Target:  5'- --gGUCGcGCGCGcgcucCAGGC-CGCGGGc -3'
miRNA:   3'- guaCAGCaUGCGCa----GUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 88933 0.67 0.931808
Target:  5'- --cGUCGUcUGCGagcucgCGGACcgCGCGGAg -3'
miRNA:   3'- guaCAGCAuGCGCa-----GUCUGa-GCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 97919 0.67 0.931808
Target:  5'- uGUGUCGcgaguCGCacUCGGACgCGCGGAc -3'
miRNA:   3'- gUACAGCau---GCGc-AGUCUGaGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 104683 0.67 0.926522
Target:  5'- uCAUGgCGUcCGCGUCGGACacCGCcgaGGAg -3'
miRNA:   3'- -GUACaGCAuGCGCAGUCUGa-GCG---CCU- -5'
25750 3' -53.9 NC_005337.1 + 125654 0.67 0.92099
Target:  5'- --aGUgGUACauGCGUCAGAagguCUCGcCGGAc -3'
miRNA:   3'- guaCAgCAUG--CGCAGUCU----GAGC-GCCU- -5'
25750 3' -53.9 NC_005337.1 + 36285 0.67 0.915213
Target:  5'- -cUGcgCGaACGCGgccaCGGugUCGCGGAu -3'
miRNA:   3'- guACa-GCaUGCGCa---GUCugAGCGCCU- -5'
25750 3' -53.9 NC_005337.1 + 122381 0.68 0.909192
Target:  5'- gCAUGUgCGUGCGCGaggUCGuGCUgCGCGGc -3'
miRNA:   3'- -GUACA-GCAUGCGC---AGUcUGA-GCGCCu -5'
25750 3' -53.9 NC_005337.1 + 4724 0.68 0.90293
Target:  5'- aCAUcUCGUACGCGUCgAGaucacggacGCUCGCGc- -3'
miRNA:   3'- -GUAcAGCAUGCGCAG-UC---------UGAGCGCcu -5'
25750 3' -53.9 NC_005337.1 + 13063 0.68 0.896427
Target:  5'- cCGUGUCGcugcUGCGCG-CGGg--CGCGGAa -3'
miRNA:   3'- -GUACAGC----AUGCGCaGUCugaGCGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.