miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 5' -59.9 NC_005337.1 + 71670 0.66 0.729932
Target:  5'- -aCGCGCGGGU--GCACGgCGG-CGAc -3'
miRNA:   3'- ggGCGCGCCUAguCGUGC-GCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 133555 0.66 0.729932
Target:  5'- gCCCGCGUaccccgCGGC-CGCGGGCGu- -3'
miRNA:   3'- -GGGCGCGccua--GUCGuGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 57876 0.66 0.739495
Target:  5'- aCCUGUGCGGA---GCAUGCuGGACa-- -3'
miRNA:   3'- -GGGCGCGCCUaguCGUGCG-CCUGcua -5'
25750 5' -59.9 NC_005337.1 + 74358 0.66 0.710571
Target:  5'- aCCG-GCGGcugggCAGCACGCGGGucuucCGGg -3'
miRNA:   3'- gGGCgCGCCua---GUCGUGCGCCU-----GCUa -5'
25750 5' -59.9 NC_005337.1 + 99251 0.66 0.710571
Target:  5'- gCUCGcCGCGGA-CGGCgACGCGGGguuCGGc -3'
miRNA:   3'- -GGGC-GCGCCUaGUCG-UGCGCCU---GCUa -5'
25750 5' -59.9 NC_005337.1 + 128470 0.66 0.720288
Target:  5'- aCCgGCGCGGGagaccgCGuGCuCGCGGGCGu- -3'
miRNA:   3'- -GGgCGCGCCUa-----GU-CGuGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 46587 0.66 0.700791
Target:  5'- cCCCGCGCGGGa-GGC-CGCGuuuGACGc- -3'
miRNA:   3'- -GGGCGCGCCUagUCGuGCGC---CUGCua -5'
25750 5' -59.9 NC_005337.1 + 38526 0.66 0.739495
Target:  5'- aUCGCGgGGAUCGuGCACgGCGGGa--- -3'
miRNA:   3'- gGGCGCgCCUAGU-CGUG-CGCCUgcua -5'
25750 5' -59.9 NC_005337.1 + 877 0.66 0.739495
Target:  5'- gCCGgGCGGAagAGCGCGCcgagcaGGAgccCGAg -3'
miRNA:   3'- gGGCgCGCCUagUCGUGCG------CCU---GCUa -5'
25750 5' -59.9 NC_005337.1 + 94770 0.66 0.728009
Target:  5'- gCCCGCgGUGGGguucaccagcagCAGCGCGCGcGCGu- -3'
miRNA:   3'- -GGGCG-CGCCUa-----------GUCGUGCGCcUGCua -5'
25750 5' -59.9 NC_005337.1 + 46456 0.66 0.739495
Target:  5'- aUCUGCGCG---CGGCGCGCcGGCGAg -3'
miRNA:   3'- -GGGCGCGCcuaGUCGUGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 64838 0.66 0.700791
Target:  5'- -gCGCGCGcGAgcuGGCGC-CGGACGAg -3'
miRNA:   3'- ggGCGCGC-CUag-UCGUGcGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 80202 0.66 0.728971
Target:  5'- gCUCGCGCGucUCGuugaugagcgcgcGCACGCGGuCGGg -3'
miRNA:   3'- -GGGCGCGCcuAGU-------------CGUGCGCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 28865 0.66 0.710571
Target:  5'- aCCCGaCG-GcGAUCAGCGCGCGcGAgUGGUc -3'
miRNA:   3'- -GGGC-GCgC-CUAGUCGUGCGC-CU-GCUA- -5'
25750 5' -59.9 NC_005337.1 + 127198 0.66 0.720288
Target:  5'- uCCCGUGCGaGAaCaagAGCAagGCGGugGAa -3'
miRNA:   3'- -GGGCGCGC-CUaG---UCGUg-CGCCugCUa -5'
25750 5' -59.9 NC_005337.1 + 99492 0.66 0.729932
Target:  5'- gCCGUGCGGcgC--UACGCGGACu-- -3'
miRNA:   3'- gGGCGCGCCuaGucGUGCGCCUGcua -5'
25750 5' -59.9 NC_005337.1 + 37311 0.66 0.74897
Target:  5'- gCCGCGaGGAgcuggUC-GCGCGCGG-CGAg -3'
miRNA:   3'- gGGCGCgCCU-----AGuCGUGCGCCuGCUa -5'
25750 5' -59.9 NC_005337.1 + 47964 0.66 0.720288
Target:  5'- uUCGCGCGcGAgu-GCgGCGCGGACGc- -3'
miRNA:   3'- gGGCGCGC-CUaguCG-UGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 121102 0.66 0.700791
Target:  5'- aCCGCgagGCGGAcgCGGCGCccGCGGAgaUGAUg -3'
miRNA:   3'- gGGCG---CGCCUa-GUCGUG--CGCCU--GCUA- -5'
25750 5' -59.9 NC_005337.1 + 44522 0.66 0.700791
Target:  5'- gCUCGCgGCGGAgcuccUCGGCuacCGCGuGGCGGa -3'
miRNA:   3'- -GGGCG-CGCCU-----AGUCGu--GCGC-CUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.