miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 5' -59.9 NC_005337.1 + 583 0.69 0.522845
Target:  5'- gCCGCGCGGA--AGC-CGCcGGCGAa -3'
miRNA:   3'- gGGCGCGCCUagUCGuGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 583 0.69 0.522845
Target:  5'- gCCGCGCGGA--AGC-CGCcGGCGAa -3'
miRNA:   3'- gGGCGCGCCUagUCGuGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 720 0.73 0.334358
Target:  5'- gCCCGCggccGCGG---GGUACGCGGGCGAg -3'
miRNA:   3'- -GGGCG----CGCCuagUCGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 720 0.73 0.334358
Target:  5'- gCCCGCggccGCGG---GGUACGCGGGCGAg -3'
miRNA:   3'- -GGGCG----CGCCuagUCGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 877 0.66 0.739495
Target:  5'- gCCGgGCGGAagAGCGCGCcgagcaGGAgccCGAg -3'
miRNA:   3'- gGGCgCGCCUagUCGUGCG------CCU---GCUa -5'
25750 5' -59.9 NC_005337.1 + 877 0.66 0.739495
Target:  5'- gCCGgGCGGAagAGCGCGCcgagcaGGAgccCGAg -3'
miRNA:   3'- gGGCgCGCCUagUCGUGCG------CCU---GCUa -5'
25750 5' -59.9 NC_005337.1 + 946 0.66 0.74897
Target:  5'- --aGCGCGGA-CAuGCugGCGGcgGCGGg -3'
miRNA:   3'- gggCGCGCCUaGU-CGugCGCC--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 946 0.66 0.74897
Target:  5'- --aGCGCGGA-CAuGCugGCGGcgGCGGg -3'
miRNA:   3'- gggCGCGCCUaGU-CGugCGCC--UGCUa -5'
25750 5' -59.9 NC_005337.1 + 981 0.67 0.690957
Target:  5'- gCgGgGCuGGcgCGGCGCGCGGAgGGc -3'
miRNA:   3'- gGgCgCG-CCuaGUCGUGCGCCUgCUa -5'
25750 5' -59.9 NC_005337.1 + 981 0.67 0.690957
Target:  5'- gCgGgGCuGGcgCGGCGCGCGGAgGGc -3'
miRNA:   3'- gGgCgCG-CCuaGUCGUGCGCCUgCUa -5'
25750 5' -59.9 NC_005337.1 + 1115 0.67 0.681075
Target:  5'- gCCGC-CGGGagcagccgCAGCACGCGcGCGAc -3'
miRNA:   3'- gGGCGcGCCUa-------GUCGUGCGCcUGCUa -5'
25750 5' -59.9 NC_005337.1 + 1115 0.67 0.681075
Target:  5'- gCCGC-CGGGagcagccgCAGCACGCGcGCGAc -3'
miRNA:   3'- gGGCGcGCCUa-------GUCGUGCGCcUGCUa -5'
25750 5' -59.9 NC_005337.1 + 1280 0.67 0.690957
Target:  5'- gCCCGCggagGCGGGUCGGCGgGCaGGuuguccauccgGCGGc -3'
miRNA:   3'- -GGGCG----CGCCUAGUCGUgCG-CC-----------UGCUa -5'
25750 5' -59.9 NC_005337.1 + 2680 0.66 0.752733
Target:  5'- gCCCGCaggacguccggagcuGCGGcGUgGGgACGCGGAgGAg -3'
miRNA:   3'- -GGGCG---------------CGCC-UAgUCgUGCGCCUgCUa -5'
25750 5' -59.9 NC_005337.1 + 3122 0.69 0.542158
Target:  5'- aCCGCGgcCGGccucgcGUcCAGCGCGCGGuCGAUg -3'
miRNA:   3'- gGGCGC--GCC------UA-GUCGUGCGCCuGCUA- -5'
25750 5' -59.9 NC_005337.1 + 3691 0.66 0.739495
Target:  5'- gCCCGaCGCGGcuucuuguccUCGGCGCcaGgGGGCGAc -3'
miRNA:   3'- -GGGC-GCGCCu---------AGUCGUG--CgCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 4114 0.68 0.591353
Target:  5'- gCgCGCGCGGAga--CGCGCGGACaGAg -3'
miRNA:   3'- -GgGCGCGCCUagucGUGCGCCUG-CUa -5'
25750 5' -59.9 NC_005337.1 + 4690 0.68 0.581433
Target:  5'- gCUCGCGCGGAcuugagCAGCACGgccaGGGgGGa -3'
miRNA:   3'- -GGGCGCGCCUa-----GUCGUGCg---CCUgCUa -5'
25750 5' -59.9 NC_005337.1 + 4758 0.72 0.396986
Target:  5'- gCCGCGCGcGAgCAGCGCGUcGAUGAc -3'
miRNA:   3'- gGGCGCGC-CUaGUCGUGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 5739 0.66 0.710571
Target:  5'- gCCGCGCucGGGcUCuGGCACggcgGCGGGCGGc -3'
miRNA:   3'- gGGCGCG--CCU-AG-UCGUG----CGCCUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.