miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25750 5' -59.9 NC_005337.1 + 7128 1.07 0.00155
Target:  5'- gCCCGCGCGGAUCAGCACGCGGACGAUg -3'
miRNA:   3'- -GGGCGCGCCUAGUCGUGCGCCUGCUA- -5'
25750 5' -59.9 NC_005337.1 + 25105 0.85 0.055926
Target:  5'- gCCCGCGCGGcgCGGCgcGCGCGGACGc- -3'
miRNA:   3'- -GGGCGCGCCuaGUCG--UGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 31498 0.82 0.091931
Target:  5'- aCCCGgGCGuGGUCAGCACGUGGAUGc- -3'
miRNA:   3'- -GGGCgCGC-CUAGUCGUGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 26697 0.8 0.131569
Target:  5'- gCC-CGUGGA-CAGCACGCGGGCGAa -3'
miRNA:   3'- gGGcGCGCCUaGUCGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 87861 0.78 0.173209
Target:  5'- gUCCGUGCGGAUgAGCgucuucuucuGCGUGGGCGAg -3'
miRNA:   3'- -GGGCGCGCCUAgUCG----------UGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 25444 0.76 0.21052
Target:  5'- gCCCGCGCGcuUCGGCAcCGUGGACGc- -3'
miRNA:   3'- -GGGCGCGCcuAGUCGU-GCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 83962 0.76 0.231656
Target:  5'- gUCCGCGCaGGG-CAGCggcgGCGCGGGCGGg -3'
miRNA:   3'- -GGGCGCG-CCUaGUCG----UGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 74552 0.76 0.239465
Target:  5'- gCCGCGCGGcgcgugaugcuggccGcgCGGCACGCGGACGc- -3'
miRNA:   3'- gGGCGCGCC---------------Ua-GUCGUGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 22630 0.75 0.242879
Target:  5'- gCCgGCGCGGAUCcGCgaggccuucgGCGCGGACGc- -3'
miRNA:   3'- -GGgCGCGCCUAGuCG----------UGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 133706 0.75 0.254551
Target:  5'- uUCCGCGCGGccgCGGCguACGCGcGGCGGUg -3'
miRNA:   3'- -GGGCGCGCCua-GUCG--UGCGC-CUGCUA- -5'
25750 5' -59.9 NC_005337.1 + 133706 0.75 0.254551
Target:  5'- uUCCGCGCGGccgCGGCguACGCGcGGCGGUg -3'
miRNA:   3'- -GGGCGCGCCua-GUCG--UGCGC-CUGCUA- -5'
25750 5' -59.9 NC_005337.1 + 57275 0.75 0.260558
Target:  5'- gCCGCGCGGGgcCGGCGCGCGcGGCu-- -3'
miRNA:   3'- gGGCGCGCCUa-GUCGUGCGC-CUGcua -5'
25750 5' -59.9 NC_005337.1 + 68242 0.74 0.279272
Target:  5'- uCCggaGCGCGGc-CGGCGCGUGGGCGAg -3'
miRNA:   3'- -GGg--CGCGCCuaGUCGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 6464 0.74 0.292333
Target:  5'- cCCCaGUuggugGCGGugacCAGCGCGCGGACGAg -3'
miRNA:   3'- -GGG-CG-----CGCCua--GUCGUGCGCCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 23170 0.74 0.292333
Target:  5'- aCCCGCGUGGA--GGCGCuGCuGGACGGc -3'
miRNA:   3'- -GGGCGCGCCUagUCGUG-CG-CCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 62958 0.74 0.292333
Target:  5'- gCCGCGCGGGUC-GC-CGCcGACGAg -3'
miRNA:   3'- gGGCGCGCCUAGuCGuGCGcCUGCUa -5'
25750 5' -59.9 NC_005337.1 + 75403 0.74 0.29904
Target:  5'- gCCGCGCGGAUgcugcggaCGGCGCGCGaGcgcGCGAa -3'
miRNA:   3'- gGGCGCGCCUA--------GUCGUGCGC-C---UGCUa -5'
25750 5' -59.9 NC_005337.1 + 6241 0.74 0.29904
Target:  5'- cCCCGCGCGaGUCAGCGuCGCuGACGc- -3'
miRNA:   3'- -GGGCGCGCcUAGUCGU-GCGcCUGCua -5'
25750 5' -59.9 NC_005337.1 + 96874 0.74 0.305866
Target:  5'- cUCCGCGCGGAUgcGCgGCGUGGACGu- -3'
miRNA:   3'- -GGGCGCGCCUAguCG-UGCGCCUGCua -5'
25750 5' -59.9 NC_005337.1 + 25966 0.74 0.312811
Target:  5'- gCCCGCGCguccaggaaGGAgcgcagCAGCAUGgGGAUGAUg -3'
miRNA:   3'- -GGGCGCG---------CCUa-----GUCGUGCgCCUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.