Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25750 | 5' | -59.9 | NC_005337.1 | + | 30241 | 0.72 | 0.372633 |
Target: 5'- cUCUGUGCGGGUCAgGCgcagGCGCGGGCa-- -3' miRNA: 3'- -GGGCGCGCCUAGU-CG----UGCGCCUGcua -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 57076 | 0.73 | 0.319874 |
Target: 5'- gCgCGUGCGGAUCA-CGCGCGaGACGGc -3' miRNA: 3'- -GgGCGCGCCUAGUcGUGCGC-CUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 720 | 0.73 | 0.334358 |
Target: 5'- gCCCGCggccGCGG---GGUACGCGGGCGAg -3' miRNA: 3'- -GGGCG----CGCCuagUCGUGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 122979 | 0.73 | 0.334358 |
Target: 5'- gCCCGCGUGGAgaccCGGaacauggGCGUGGGCGAg -3' miRNA: 3'- -GGGCGCGCCUa---GUCg------UGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 77436 | 0.73 | 0.341777 |
Target: 5'- gCCCGCGUGGAg-GGCAUGUGGAgGu- -3' miRNA: 3'- -GGGCGCGCCUagUCGUGCGCCUgCua -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 64927 | 0.73 | 0.349316 |
Target: 5'- gCCCGCGCGGGaaAGCGCGCGccgUGAUc -3' miRNA: 3'- -GGGCGCGCCUagUCGUGCGCcu-GCUA- -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 122212 | 0.73 | 0.349316 |
Target: 5'- --gGCGCGGAcgugUCGGCGCGCacgccGGACGAc -3' miRNA: 3'- gggCGCGCCU----AGUCGUGCG-----CCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 66118 | 0.72 | 0.36318 |
Target: 5'- gCgCGCGUGGAguucaaguccaAGCGCGUGGACGGUc -3' miRNA: 3'- -GgGCGCGCCUag---------UCGUGCGCCUGCUA- -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 121563 | 0.72 | 0.364744 |
Target: 5'- uCCUcgaGCGCGGcgC-GCGCGCGGACGc- -3' miRNA: 3'- -GGG---CGCGCCuaGuCGUGCGCCUGCua -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 25966 | 0.74 | 0.312811 |
Target: 5'- gCCCGCGCguccaggaaGGAgcgcagCAGCAUGgGGAUGAUg -3' miRNA: 3'- -GGGCGCG---------CCUa-----GUCGUGCgCCUGCUA- -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 96874 | 0.74 | 0.305866 |
Target: 5'- cUCCGCGCGGAUgcGCgGCGUGGACGu- -3' miRNA: 3'- -GGGCGCGCCUAguCG-UGCGCCUGCua -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 6464 | 0.74 | 0.292333 |
Target: 5'- cCCCaGUuggugGCGGugacCAGCGCGCGGACGAg -3' miRNA: 3'- -GGG-CG-----CGCCua--GUCGUGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 26697 | 0.8 | 0.131569 |
Target: 5'- gCC-CGUGGA-CAGCACGCGGGCGAa -3' miRNA: 3'- gGGcGCGCCUaGUCGUGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 87861 | 0.78 | 0.173209 |
Target: 5'- gUCCGUGCGGAUgAGCgucuucuucuGCGUGGGCGAg -3' miRNA: 3'- -GGGCGCGCCUAgUCG----------UGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 83962 | 0.76 | 0.231656 |
Target: 5'- gUCCGCGCaGGG-CAGCggcgGCGCGGGCGGg -3' miRNA: 3'- -GGGCGCG-CCUaGUCG----UGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 74552 | 0.76 | 0.239465 |
Target: 5'- gCCGCGCGGcgcgugaugcuggccGcgCGGCACGCGGACGc- -3' miRNA: 3'- gGGCGCGCC---------------Ua-GUCGUGCGCCUGCua -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 22630 | 0.75 | 0.242879 |
Target: 5'- gCCgGCGCGGAUCcGCgaggccuucgGCGCGGACGc- -3' miRNA: 3'- -GGgCGCGCCUAGuCG----------UGCGCCUGCua -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 133706 | 0.75 | 0.254551 |
Target: 5'- uUCCGCGCGGccgCGGCguACGCGcGGCGGUg -3' miRNA: 3'- -GGGCGCGCCua-GUCG--UGCGC-CUGCUA- -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 68242 | 0.74 | 0.279272 |
Target: 5'- uCCggaGCGCGGc-CGGCGCGUGGGCGAg -3' miRNA: 3'- -GGg--CGCGCCuaGUCGUGCGCCUGCUa -5' |
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25750 | 5' | -59.9 | NC_005337.1 | + | 23170 | 0.74 | 0.292333 |
Target: 5'- aCCCGCGUGGA--GGCGCuGCuGGACGGc -3' miRNA: 3'- -GGGCGCGCCUagUCGUG-CG-CCUGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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